Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0685 ATGCCGGACTCCAATTTCCAAGACGCGATGTACGGTTCCGGAGTCATGAACAACGGTGGCCGGGATTTGGATAACATTCAGAACAGAGTTGTCGATGAAGATGACGACATCAACGGCGGGGAAGAGTCCATAGACAATCCTCAGATGCGCTTCGAAGACTCTAGGGGAATGAGCGGCTCGGTCTCGGTAATTAACCGAGTTGAGGACGTTGTTCCTTCGACGTATGTTTCCGGCTCTGATTACAATCCTTTGACTGGAAATGGCGGTGCTGACCAACTTACGCTGTCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTGTCGCCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCAATTGGAAGTGTTCCCGTCAACCAACAGGGTGCCGATGGCTTTCCTGTCAGGTCGGTTCAGCCACAAAGAGCTGCTTCATTGAGTAGGTTTAGAGAGAAGAGAAAAGAAAGGTGTTTTGAGAAGAAAATTCGCTACAGTGTGCGTAAAGAAGTAGCGCTGAGAATGCAGCGGAAGAAGGGACAGTTTATATCCTCTAAAGCTATTGGAGATGAAGTGGGCTCATCTTCAGTTTTGTCTCAGACGTTGGATTCTGGACAAGATGATGGATTGTTGGAGACCTCATGTACACATTGTGGAACCAGTTCAAAATCTACTCCAATGATGCGTCGTGGGCCTGCTGGTCCAAGGACTCTGTGCAATGCATGTGGGCTCAAGTGGGCCAATAAGGGAATTTTGAGAGATCTTTCCAAGGTTTCAAATCCTAGCATTCAAGAACCCTCTGCAAAAGAGATTGAACAGAGCGACGGCGAGGCTGGTATTGAATCCGATGCTGCAATTAATGTGGATATTCTCACTTCTAATGGTGATAAAAAACCACAAAAGGTACTGGTAGATGTACAAAAGTTGATTAACTGA 966 46.79 MPDSNFQDAMYGSGVMNNGGRDLDNIQNRVVDEDDDINGGEESIDNPQMRFEDSRGMSGSVSVINRVEDVVPSTYVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAIGSVPVNQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYSVRKEVALRMQRKKGQFISSKAIGDEVGSSSVLSQTLDSGQDDGLLETSCTHCGTSSKSTPMMRRGPAGPRTLCNACGLKWANKGILRDLSKVSNPSIQEPSAKEIEQSDGEAGIESDAAINVDILTSNGDKKPQKVLVDVQKLIN 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1709733 1716891 + PI0019301.1 Cmetu01g0685 345959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0685 321 ProSiteProfiles GATA-type zinc finger domain profile. 224 276 IPR000679 GO:0006355|GO:0043565
Cmetu01g0685 321 SMART tify_2 86 121 IPR010399 -
Cmetu01g0685 321 SMART GATA_3 219 272 IPR000679 GO:0006355|GO:0043565
Cmetu01g0685 321 Pfam CCT motif 153 195 IPR010402 GO:0005515
Cmetu01g0685 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 271 - -
Cmetu01g0685 321 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Cmetu01g0685 321 PANTHER GATA TRANSCRIPTION FACTOR 28 29 314 IPR045280 GO:0006355
Cmetu01g0685 321 Gene3D - 221 285 IPR013088 GO:0006355|GO:0008270
Cmetu01g0685 321 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355|GO:0043565
Cmetu01g0685 321 Pfam tify domain 90 120 IPR010399 -
Cmetu01g0685 321 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515
Cmetu01g0685 321 MobiDBLite consensus disorder prediction 270 290 - -
Cmetu01g0685 321 Pfam GATA zinc finger 225 260 IPR000679 GO:0006355|GO:0043565
Cmetu01g0685 321 CDD ZnF_GATA 224 274 IPR000679 GO:0006355|GO:0043565
Cmetu01g0685 321 MobiDBLite consensus disorder prediction 1 57 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0685 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0685 Cmetu-Chr1:1709733 Cmetu03g0605 Cmetu-Chr3:2904005 3.60E-62 dispersed
Cmetu01g0685 Cmetu-Chr1:1709733 Cmetu04g3117 Cmetu-Chr4:13266872 6.20E-06 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g2498 . 1 230 Tify Gene Family AT3G21175 56.5 7.3e-59 224.2
Cmetu03g0605 . 45 293 Tify Gene Family AT4G24470 54.1 1.9e-71 266.5
Cmetu01g0685 . 89 298 Tify Gene Family AT4G24470 53.7 1.3e-48 190.7
Cmetu01g2498 . 1 290 Tify Gene Family AT1G51600 59.4 2.3e-87 319.3
Cmetu01g0685 . 86 300 Tify Gene Family AT1G51600 55.2 1.9e-52 203.4
Cmetu03g0931 . 71 246 Tify Gene Family AT1G51600 59.0 6.0e-51 198.4
Cmetu03g0605 . 38 247 Tify Gene Family AT1G51600 52.4 4.0e-47 185.7
Cmetu03g0605 . 45 293 Tify Gene Family AT4G24470 54.1 1.9e-71 266.5
Cmetu01g0685 . 89 298 Tify Gene Family AT4G24470 53.7 1.3e-48 190.7
Cmetu01g2498 . 1 290 Tify Gene Family AT1G51600 59.4 2.3e-87 319.3
Cmetu01g0685 . 86 300 Tify Gene Family AT1G51600 55.2 1.9e-52 203.4
Cmetu03g0931 . 71 246 Tify Gene Family AT1G51600 59.0 6.0e-51 198.4
Cmetu03g0605 . 38 247 Tify Gene Family AT1G51600 52.4 4.0e-47 185.7
Cmetu01g2498 . 1 230 Tify Gene Family AT3G21175 56.5 7.3e-59 224.2
Cmetu05g1474 . 1 180 Tify Gene Family AT4G14713 52.1 1.9e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7250 PF06203 CCT 1.80E-15 CL0281 Cmetu TF