Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0789 ATGGGTATCTTTTCAAAGCAAAGAATCTGGAGAACGGGAACGACCCATGATGATTCGATGGGTATTAATGGGGTTTCTGCAGCGAGCAAGAGGAAATGGACCCGTTTTTTGCCTCTGTTTGTGGCCATTGTGGTTATTGCAGAGATCGCTTCTCTGAGTCGGCTTGATATGGCGAAAAATGCGGCTATGGTGGATTCTTGGGTCGACTTGTTCTATGGATCTCCGATTTTGCAAGAAGGGAATGAAGGTGGTAGTAAAACGGGCACTGAAATTTCTATTGATGATGGAGGGATCGATGGAATTAGCTGTGAGGAGTGGCTGGAGAAGGAGGATTCCGTGGAGTATTCTAGGGACTTCAATAGGCAACCTGTTTGGTTTCTGGCTCCGAGAAGGTTCTTTCTATTCTCCTTTTGTGAGTGGAGAACTTGTGATGTGGGGTGCCAATTTGGATTTAATCCTGGACAGAAGCCTGATGCTATATTCGGATCACCTAATCAAGGTAGTGTTGCTAGTGTACTTCGATCCATGGAATCATCACATTACTATCCTGAGAACAATATTGATTTGGCGAGACGGAAGGGTTATACCGTGGTTATGACCACTAGTCTATCATCAGATGTACCTGTTGGATATTTTTCATGGGCAGAATACGAGATAATGGCACCAGTGCAGCCAAAGACCGAGCCTGCCCTTGCAGCTGCCTTCATTTCAAATTGTGGTGCTCGCAACTTCCGTTTGCAAACTCTTGATGCGCTTGAGAAGTTGAATGTCAAAATTGATTCGTATGGTAGCTGCCATAGGAACCGCGATGGAAGAGTTGACAAAGTGGAAACATTGAAGCGCTACAAGTTCAGCTTGGCATTTGAGAATTCCAATGAAGAAGATTATGTCACGGAAAAATTTTTTCAATCTCTTGTTGCAGGAACTATTCCGGTGGTGGTTGGCGCTCCAAACATCAAGGAGTTTGCTCCTTCTCCTGATTCATTTTTGCATATCAAGGAGTTTTCTGATGTTGAGTCGATTGCCAAGTCCATGAAATACCTTGCTAAAAATCCCAAAATATACAATCAATCGCTAAGATGGAAGTACGACGGTCCATCCGAGTCTTTCAAGGCCCTTGTCGATATGGCAGCAGTGCACTCATCCTGCCGCCTTTGCATCCATATGGCAACCATCATCCACGAGAAAGAAGAAAACAGTCCCAGGTTCAAGAAACGACCTTGCAAGTGTTCTCGAGGCTCTGAAACTGTGTATCATTTATACATAAGGGAGAGGGGGAGGTTTGAAATGCAGTCCATTTTTTTGAGGTCAGGAAATTTGACGTTGGAGGCTTTAGAATCAATGGTGCTAAAAAAGTTCAATTCTTTGAAACACGTACCAATTTGGAAGCAAGAAAGGCCCGAAAGCATAAGTGGAGGAGATGAACTAAAACTATACAGAATATATCCTGTTGGGTTGACTCAAAGGCAGGCTTTATATACCTTCAGATTCAAAGGCAATGATGATTTCAGAACACACATAGAAACACACCCTTGTGCAAAGATGGAAATCATATTTGTCTGA 1563 43.38 MGIFSKQRIWRTGTTHDDSMGINGVSAASKRKWTRFLPLFVAIVVIAEIASLSRLDMAKNAAMVDSWVDLFYGSPILQEGNEGGSKTGTEISIDDGGIDGISCEEWLEKEDSVEYSRDFNRQPVWFLAPRRFFLFSFCEWRTCDVGCQFGFNPGQKPDAIFGSPNQGSVASVLRSMESSHYYPENNIDLARRKGYTVVMTTSLSSDVPVGYFSWAEYEIMAPVQPKTEPALAAAFISNCGARNFRLQTLDALEKLNVKIDSYGSCHRNRDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGAPNIKEFAPSPDSFLHIKEFSDVESIAKSMKYLAKNPKIYNQSLRWKYDGPSESFKALVDMAAVHSSCRLCIHMATIIHEKEENSPRFKKRPCKCSRGSETVYHLYIRERGRFEMQSIFLRSGNLTLEALESMVLKKFNSLKHVPIWKQERPESISGGDELKLYRIYPVGLTQRQALYTFRFKGNDDFRTHIETHPCAKMEIIFV 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 499041 504129 - PI0011693.1 Cmetu01g0789 346063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0789 520 Gene3D - 176 369 IPR038577 -
Cmetu01g0789 520 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 44 470 IPR001503 GO:0006486|GO:0008417|GO:0016020
Cmetu01g0789 520 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 131 396 - -
Cmetu01g0789 520 FunFam Glycoprotein 3-alpha-L-fucosyltransferase A 177 369 - -
Cmetu01g0789 520 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 230 391 IPR001503 GO:0006486|GO:0008417|GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0789 K00753 - - csv:101205170 984.171
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu06g2283 Cmetu-Chr6:10088645 Cmetu01g0789 Cmetu-Chr1:499041 1.40E-151 transposed
Cmetu01g0789 Cmetu-Chr1:499041 Cmetu06g1683 Cmetu-Chr6:10081496 3.80E-37 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g1047 . 36 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.1 6.7e-154 541.2
Cmetu12g1033 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 1.4e-151 533.5
Cmetu10g1047 . 101 566 Xyloglucan Fucosyltransferase1 AT1G14100 59.4 9.8e-163 570.5
Cmetu12g1033 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.5 6.0e-160 561.2
Cmetu10g1047 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.9 1.7e-137 486.5
Cmetu12g1033 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 7.5e-133 471.1
Cmetu01g0789 . 1 520 Xyloglucan Fucosyltransferase1 AT1G49710 62.3 9.7e-187 650.2
Cmetu06g2283 . 1 323 Xyloglucan Fucosyltransferase1 AT1G49710 72.2 2.9e-138 489.2
Cmetu03g2230 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.5 3.9e-167 584.7
Cmetu10g1047 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 7.2e-183 637.5
Cmetu12g1033 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.1 5.0e-168 588.2
Cmetu10g1047 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.6 2.2e-200 695.7
Cmetu12g1033 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.6 1.9e-188 656.0
Cmetu10g1047 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 1.9e-153 539.7
Cmetu12g1033 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.4 1.4e-145 513.5
Cmetu10g1047 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.1 2.7e-147 519.2
Cmetu12g1033 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.4 8.4e-141 497.7
Cmetu10g1047 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.4 2.4e-148 522.7
Cmetu12g1033 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 1.3e-144 510.4
Cmetu01g0789 . 1 520 Xyloglucan Fucosyltransferase1 AT3G19280 61.7 5.2e-185 644.4
Cmetu06g2283 . 1 323 Xyloglucan Fucosyltransferase1 AT3G19280 74.0 1.2e-141 500.4
Cmetu10g1047 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 7.2e-183 637.5
Cmetu12g1033 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.1 5.0e-168 588.2
Cmetu10g1047 . 36 566 Xyloglucan Fucosyltransferase1 AT2G03220 63.6 2.2e-200 695.7
Cmetu12g1033 . 59 581 Xyloglucan Fucosyltransferase1 AT2G03220 61.6 1.9e-188 656.0
Cmetu10g1047 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 57.1 7.2e-183 637.5
Cmetu12g1033 . 117 583 Xyloglucan Fucosyltransferase1 AT2G03210 60.1 5.0e-168 588.2
Cmetu10g1047 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 53.4 2.4e-148 522.7
Cmetu12g1033 . 115 583 Xyloglucan Fucosyltransferase1 AT2G15390 52.5 1.3e-144 510.4
Cmetu10g1047 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 54.1 2.7e-147 519.2
Cmetu12g1033 . 106 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.4 8.4e-141 497.7
Cmetu10g1047 . 36 565 Xyloglucan Fucosyltransferase1 AT1G14080 52.1 6.7e-154 541.2
Cmetu12g1033 . 113 583 Xyloglucan Fucosyltransferase1 AT1G14080 54.8 1.4e-151 533.5
Cmetu10g1047 . 101 566 Xyloglucan Fucosyltransferase1 AT1G14100 59.4 9.8e-163 570.5
Cmetu12g1033 . 115 583 Xyloglucan Fucosyltransferase1 AT1G14100 57.5 6.0e-160 561.2
Cmetu10g1047 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 53.9 1.7e-137 486.5
Cmetu12g1033 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14110 51.7 7.5e-133 471.1
Cmetu10g1047 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.9 1.9e-153 539.7
Cmetu12g1033 . 95 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.4 1.4e-145 513.5
Cmetu01g0789 . 1 520 Xyloglucan Fucosyltransferase1 AT3G19280 61.7 5.2e-185 644.4
Cmetu06g2283 . 1 323 Xyloglucan Fucosyltransferase1 AT3G19280 74.0 1.2e-141 500.4
Cmetu01g0789 . 1 520 Xyloglucan Fucosyltransferase1 AT1G49710 62.3 9.7e-187 650.2
Cmetu06g2283 . 1 323 Xyloglucan Fucosyltransferase1 AT1G49710 72.2 2.9e-138 489.2
Cmetu03g2230 . 7 405 Xyloglucan Fucosyltransferase1 AT1G71990 69.5 3.9e-167 584.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70