Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0797 ATGGCGAAGACTAGAGTTCATGAGCCAACGCGATCGTTAGCAAATGATACATGTACAATTCGGCTGACTGAAATTTTTGGGAAGGCGGCTACGTCTATTTTGGGCTTCTTTCTCATGGTGGGTCTTTGCAATGGCGTGCATTACCTTTTGAGGCCATTTTCTCAACCTCGCATTACCTCTGATACGATCGTAGGTTTGGTTGTTGGCAACTTCATAAGGAAGAACCTTCATATATCAACGATTAAGACGCTGCGTTATATTGTCGACTTTGGTATGGTATGCTATATGTTTGTGCTGGGATTGGAGGTGGATCCATATGTACTCTTCAAAGCACCTACACGTGATGCTAAGGTAGCTTATGCTGGAATGATTTCAACATTCATCTTAGCCTGTTCCATAGTCCCATTTATTAGCTTTACAAAGTCAAAAGAGATCAGTTTCATACTCTCCCTCTCAACTGTCCTCTCTAGCACAGCTTCTCCTGTGCTAACCCGTTTGATTACCAGTCTTAAAATAGGTAAGTCAGATATAGGCCGGCTCGTCATTGCTGCTGGCATGCATTCTGATTTTATATCCACCCTCATGATCTGTGTTGGTTATCTCTTTTGCAAATGCCAAGAGACACGCATCTCCTTTATAAAAGGTTTTCAGTTAGGCATTCTATTATTGATCCAGGCAGTACTGACGGCGAAGGTTTCACCAGTATTCATGAACTGGGTAAATAACGAAAACCCCGAGGGTAAACCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGCTGCTGCCCTACTGTGTTTGGTTACAATCCGATTCTCAGTGCATTCTTAGCTGGAACGTTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAACTACCTGCTTACTACCGTTTTCTATCCCATCTTTTTCTTTTGGATGGGGGTTGAATCCAAGCTGACTGACTTTGAACCTGGACAAATAATGACATGGGTCAGGTTAATTCTGCTCTTTGCTATTGCAACCATAGGAAAAGTTGTTGGTACTGTCATTGCTGGGGCAATTTTGGGGTTTCATTGGCCTGAATCAGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATATACTTGGCTATTGCTGCAAAAACAGCTGGAAAGATAACTACATCTACGAGTATGGTGATGGTAATTGTAATCTTCTTCACAGTCGTGCATGCCCCAAAAGTTGTATCACATATAATCCAAAGGGCAAGGAAACGCACACCTACACATCGAATGGCTCTCCAATTGCTTGATCCGTCAAGTGAGCTTAAGATCTTGTTATGCATACATGGACCTCAGAACACTCCAGCAGCCATTAACATCATGGAGATTTCTCGGGGGACAGCTAACCCTGGGGTTGTTGTATATGTTACAGACATGATTGAACTTACAGATGAAATAGCATCCACATTAGTTCAGGGTGAAGGAGTTGACACCGTGACTGTAACCCACACAGGAGTGACACAAATGAGAGAACAAGTTACTTCTGCAGTTCAAAGCTATGTAGATGAAAATGGAGAAGGGATTACCCTCAGAAGAATGTTGGCTCTCTCAACATTCAATTCTATGGCTCAGGACATTTGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTCCACAAGAGCCAGCGTGGAGACGGATCATTGAGTGAGGGCCAAGCAGCTTTCCGCTATGTAAACCGCAAGGTTCTCAGGCATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGTCTTGGATCAGTAGAGAAAATTTCAAGGTCGTATGTATCTCAAACTGTGGCAGTCATCTTCATTGGTGGTAAAGACGACCGAGAAGCATTAGCCTATGCCGGTCGAGTAGCAAGGCATCCCGGAGTTAAACTCTCAGTGATTAGATTCTTAGTGGATGCCGATGCAGAAAATGCTGCAAGAAGAGCGGGAACTTACAGGATAAGTGTGGCTGAGCAGGAAGAGGAAATGAGACAAGACGATGAATGCTTTGCCTACTTCTACGAACGGCATGTGGCTGGTGGGCATGTTGCTTATGTTGAAAAACATCTGGCCAGTTCCTCCGAGACGTATTCTACTTTGAAATCACTGGAAGGGCAATATGCCCTCATAATTGTAGGTCGAGGTGGGAAGGTTAATACGGTGTTAACTTACGGGATGAATGACTGGCAACAATGTCCAGAACTGGGTCCTATAGGGGATATTCTCTCCGGGTCTGAATTCTCTGTTAGGACCTCAGTTTTGATCATCCATCAACACAATCTAAAAGGAGAACTAGATGGGCTTGATGATGACTTTTCAATAATGTAG 2373 43.91 MAKTRVHEPTRSLANDTCTIRLTEIFGKAATSILGFFLMVGLCNGVHYLLRPFSQPRITSDTIVGLVVGNFIRKNLHISTIKTLRYIVDFGMVCYMFVLGLEVDPYVLFKAPTRDAKVAYAGMISTFILACSIVPFISFTKSKEISFILSLSTVLSSTASPVLTRLITSLKIGKSDIGRLVIAAGMHSDFISTLMICVGYLFCKCQETRISFIKGFQLGILLLIQAVLTAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCCCPTVFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVESKLTDFEPGQIMTWVRLILLFAIATIGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAAKTAGKITTSTSMVMVIVIFFTVVHAPKVVSHIIQRARKRTPTHRMALQLLDPSSELKILLCIHGPQNTPAAINIMEISRGTANPGVVVYVTDMIELTDEIASTLVQGEGVDTVTVTHTGVTQMREQVTSAVQSYVDENGEGITLRRMLALSTFNSMAQDICILAEELMGALIILPFHKSQRGDGSLSEGQAAFRYVNRKVLRHAPCSVGILVDRGLGSVEKISRSYVSQTVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAENAARRAGTYRISVAEQEEEMRQDDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSLEGQYALIIVGRGGKVNTVLTYGMNDWQQCPELGPIGDILSGSEFSVRTSVLIIHQHNLKGELDGLDDDFSIM 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26117769 26121754 + PI0008246.1 Cmetu01g0797 346071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0797 790 FunFam Cation/H(+) antiporter 28 30 429 - -
Cmetu01g0797 790 Gene3D - 444 743 - -
Cmetu01g0797 790 Gene3D - 29 429 IPR038770 -
Cmetu01g0797 790 PANTHER CATION/H + ANTIPORTER 36 775 - -
Cmetu01g0797 790 Pfam Sodium/hydrogen exchanger family 40 418 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0797 K26731 - - csv:101211645 1478.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0797 Cmetu-Chr1:26117769 Cmetu11g1833 Cmetu-Chr11:30531655 2.10E-95 dispersed
Cmetu01g0797 Cmetu-Chr1:26117769 Cmetu10g0835 Cmetu-Chr10:13649216 3.90E-62 transposed
Cmetu01g0797 Cmetu-Chr1:26117769 Cmetu08g1461 Cmetu-Chr8:2970968 3.90E-62 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1119 Blo06g00594 . . . . Bpe10g00541 . . . . . . . . Sed09g1353 . . Bhi09g00656 Tan06g0598 Cmetu01g0797 . . . . . . . . . . . . Cone20ag1063 . . Lsi02g02561 . . . . . . . . . . . . . . Cma08g00518 . Car08g00430 . . . . . . . . . . Cla09g00367 Cam09g0397 Cec09g0401 Cco09g0384 Clacu09g0400 . Cre09g0382 . . Chy01g01852 Cme01g02457
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu11g1833 . 11 819 Antiporter Super Family AT2G13620 72.2 0.0e+00 1163.3
Cmetu07g2010 . 11 785 Antiporter Super Family AT2G13620 50.4 8.5e-209 724.2
Cmetu08g1910 . 77 848 Antiporter Super Family AT3G53720 69.0 2.2e-291 998.4
Cmetu07g2010 . 1 785 Antiporter Super Family AT5G41610 66.9 1.6e-297 1018.8
Cmetu07g1694 . 1 759 Antiporter Super Family AT5G41610 66.7 6.7e-291 996.9
Cmetu07g0419 . 7 790 Antiporter Super Family AT5G41610 64.0 2.3e-283 971.8
Cmetu08g1910 . 9 833 Antiporter Super Family AT5G41610 50.5 4.1e-208 721.8
Cmetu07g2010 . 11 783 Antiporter Super Family AT4G23700 66.2 9.8e-290 993.0
Cmetu07g0419 . 8 790 Antiporter Super Family AT4G23700 62.4 3.6e-276 948.0
Cmetu07g1694 . 9 776 Antiporter Super Family AT4G23700 60.7 5.2e-267 917.5
Cmetu07g2010 . 4 783 Antiporter Super Family AT3G17630 62.9 3.1e-272 934.9
Cmetu07g0419 . 6 790 Antiporter Super Family AT3G17630 59.3 4.0e-256 881.3
Cmetu07g1694 . 11 759 Antiporter Super Family AT3G17630 60.7 4.9e-254 874.4
Cmetu08g1910 . 9 819 Antiporter Super Family AT3G17630 52.8 3.5e-207 718.8
Cmetu07g2010 . 4 785 Antiporter Super Family AT1G64170 57.5 3.1e-240 828.6
Cmetu07g0419 . 3 790 Antiporter Super Family AT1G64170 54.7 2.6e-226 782.3
Cmetu07g1694 . 15 764 Antiporter Super Family AT1G64170 54.7 1.2e-218 756.9
Cmetu11g1833 . 11 819 Antiporter Super Family AT2G13620 72.2 0.0e+00 1163.3
Cmetu07g2010 . 11 785 Antiporter Super Family AT2G13620 50.4 8.5e-209 724.2
Cmetu07g2010 . 4 785 Antiporter Super Family AT1G64170 57.5 3.1e-240 828.6
Cmetu07g0419 . 3 790 Antiporter Super Family AT1G64170 54.7 2.6e-226 782.3
Cmetu07g1694 . 15 764 Antiporter Super Family AT1G64170 54.7 1.2e-218 756.9
Cmetu07g2010 . 11 783 Antiporter Super Family AT4G23700 66.2 9.8e-290 993.0
Cmetu07g0419 . 8 790 Antiporter Super Family AT4G23700 62.4 3.6e-276 948.0
Cmetu07g1694 . 9 776 Antiporter Super Family AT4G23700 60.7 5.2e-267 917.5
Cmetu07g2010 . 1 785 Antiporter Super Family AT5G41610 66.9 1.6e-297 1018.8
Cmetu07g1694 . 1 759 Antiporter Super Family AT5G41610 66.7 6.7e-291 996.9
Cmetu07g0419 . 7 790 Antiporter Super Family AT5G41610 64.0 2.3e-283 971.8
Cmetu08g1910 . 9 833 Antiporter Super Family AT5G41610 50.5 4.1e-208 721.8
Cmetu07g2010 . 4 783 Antiporter Super Family AT3G17630 62.9 3.1e-272 934.9
Cmetu07g0419 . 6 790 Antiporter Super Family AT3G17630 59.3 4.0e-256 881.3
Cmetu07g1694 . 11 759 Antiporter Super Family AT3G17630 60.7 4.9e-254 874.4
Cmetu08g1910 . 9 819 Antiporter Super Family AT3G17630 52.8 3.5e-207 718.8
Cmetu08g1910 . 77 848 Antiporter Super Family AT3G53720 69.0 2.2e-291 998.4
Cmetu01g0797 . 10 790 Antiporter Super Family AT3G52080 52.9 8.8e-235 810.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008009 0 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 34