Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0851 ATGGACAATGCAGGTCCAGTTTGGCGCTCAAACGAGAGGTTTCTCAATGCTATCAAGCAATTTCTCTGCTTATCGTTATTGAAAAACAGTGCCCTCTCGGCGATGGCCATCTTCCAGCTTCAATGTTGTATTTTTACGAGCTTGTTGACAAAATTTAGATCAGGATTGAAAGCAGAAGTTGGCATCTTCTTTCCCATGCTTGTCCTTCGAGTGCTTGAGAATGTACTTCAGCCTAGTTTCTTGCAGAAGATGACCGTGCTCAATTTGTTGGATAAGATATCTCAAGATTCACAGACTATGGTCGACATTTTTGTCAACTATGATTGTGATGTTGATTCACCAAATATTTTCGAGAGGATTGTGAATGGCCTTTTGAAAACTGCTCTTGGACCGCCTTCTGGTTCAACCACGACTTTGTCTCCAGCACAGGATATTACATTTAGGCTTGAATCTGTTAAGTGTTTGGTAAGCATCATTAAATCAATGGGTACTTGGATGGACCAACAAATGAAGCTAGACGATACAAATATTCTCAAGACTTCTGAGAATGACGCATCACCTGAGAATCAATTAAGTGGGGAAGAAACAGCTGCTGTTGACTCTGAGCTCCAATCAGATGGAAATTCTGAGTTCTCAGATGCTGCTACACTTGAGCAAAGGAGAGCTTACAAAATCGAACTCCAGAAAGGTATTTCGCTGTTCAATAGGAAACCTTCCAGGGGTATTGAGTTTCTGATCAGCACAAAAAAAGTTGGTGGTTCTCCTGAAGAGGTGGCTTCTTTTCTCAAGAATACAAACGGCCTGAATGAAACAGTCATTGGTGATTATTTGGGTGAAAGGGAGGAATTCCCTTTGAAAGTTATGCATGCTTATGTTGATTCATTTAATTTTAAAGTGATGGACTTTGGCGAAGCAATAAGGTTTTTCCTGCGGGGCTTCAGGTTACCAGGAGAAGCACAAAAGATTGATCGGATCATGGAGAAGTTTGCCGAGCGGTACTGTAAATGTAACCCTGGTTCATTCACGAGTGCAGATACTGCTTATGTTCTTGCTTATTCTGTAATCATGCTGAACACAGATGCTCATAATAACATGGTGAAAGAAAAGATGACAAAAGCTGATTTTATTCGGAACAATCGAGGAATTGATGACGGCAAGGACTTACCCGACGAGTATCTTGGTGCTCTTTATGATCAGATTGTTAGGAATGAAATTAAGATGAATTCTGATTCTTCTGCTTCACAAAGTAAGCAGGCAACTAGCATCAACAAACTTTTGGGCTTGGATGGTATACTCAATTTAGTTTCTTGGAAGCAGACAGAAGAAAAAGCTGTTGGTGCAAATGGGCTTCTTATAAGGCACATACAGGAGCAGTTTAAGGCGAAGTCTGGAAAATCCGAATCTGTTTATCACGCTGTGACGGATGTAACAATATTGAGGTTTATGGTGGAAGTTTGCTGGGGTCCTATGTTGGCGGCATTCAGTGTGACTCTCGACCAAAGTGATGATAAGCTTGCTACTTCTCAATGCTTACTAGGCTTTCGGTATGCTGTGCATGTTACAGCTGTTATGGGCTTGCAGACTCAACGGGACGCTTTTGTGACATCCATGGCTAAGTTTACCTATCTTCATTGTGCTGCAGATATGAAACAAAAAAACGTTGAAGCTGTGAAGGCTATAATATCGATTGCCATAGAGGATGGTGATTTTCTTCAAGAGGCATGGGAGCACATATTTACATGTCTCTCTAGAATTGAGAACTTACAATTATTGGGAGAGGGTGCACCATCTGATGCATCGTTTTTGACCACATCAAATATTGAAACTGAAGAAAAAGCTCTAAAGTCGGCAGGTTTATCATCTCTGAAGAGAAAAGGAAGTCTCCAAAATCCAGCTGTTATGGCTGTTGTTCGTGGAGGTTCATACGACAGCACCTCTCTTGGAGCAAATTCTTCTCCAGGACCAGTAACTCCTGATCAGATTAACCACCTAATTTCAAACTTGCATTTGCTCCATCAAATAGGCAATTTTGAGTTGAACCACGTATTTGCTCATAGTCAAAGCTTGAACAGTGAAGCGATAGTAGCATTCGTGAAGGCTCTTTGCAAAGTTGCTATTGCAGAGTTGCAGTCTCCTACCGACCCACGTGTGTTCAGCCTCACCAAATTAGTTGAAGTGGCGCATTACAACATGAACCGTATCAGATTGGTGTGGTCTCGCATGTGGAACGTTCTTTCTGATTTCTTTGTGTCAGTTGGCTTGTCAGAAAACCTTTCAGTTGCAATATTTGTGATGGACTCTCTGAGGCAGCTCGCAATGAAATTTTTGGAGCGTGAGGAGCTTGCGAATTATAACTTCCAGAATGAATTTCTGAGACCCTTCGTAATAGTTATGCAGAAAAGCAGCTCCACAGAAATTAGGGAATTGATAGTTCGATGCATTTCGCAGATGGTTCTCAGTCGAGTCAATAATGTGAAATCTGGATGGAAAAGTGTTTTTATGGTTTTCACTGCTGCTGCTGCTGACGAGCGGAAGAATATTGTCTTATTGGCTTTTGAAACCATGGAAAAAATAGTTCGAGAATATTTTCCTTACATAACTGAGACTGAAACTACAACATTTACCGATTGTGTCCGATGTCTGATTACTTTTACAAATAGCAGATTTAATAGTGATGTCAGTCTCAATGCTATTGCGTTCCTTCGCTTTTGTGCTGTAAAACTTGCAGAAGGGGGACTTGTTTGCTATGAGATGGCTGGAGATAATGTTTCATCCAATTCTCCAGATGAGCCCACGCCCACGCCCACGCCCACGCCCACCGACAAGGATGATTATGCTTCCTATTGGGTTCCTTTACTTGCAGGGCTATCAAAGTTAACATCTGATCCTAGATCACCAATCAGAAAAAGTTCCTTGGAAGTACTTTTTAATATCCTGAAGGACCATGGTCATCTTTTCTCGCGTCAATTTTGGGTTGGTGTTATCAATTCTGTTGTTTTCCCCATATTCAATTCTTTACATGACAAGAAAGAAGTGGACATGAATGAAAACGATGAATACACAGAAGGAAGTACATGGGATTCTGATACCTGTGCAGTGGCAGCAGATTGTTTAGTAGATCTGTTCGTTAGTTTTTTCAATGTAATAAGATCTCAACTACCCGGCGTGGTGACGATTCTTACGGGATTCATTAGGAGTCCAATCCAAGGTCCTGCCAGCACTGGTGTTGCTGCATTAATGCGTTTGGCAGGCGACTTGGCTAACAGGCTTACCGAAAATGAGTGGAGAGAGATCTTTCTTGCTTTGAAGGAAGCTGCCACATTAACCGTGCCTGGATTTCTCAAGGTCCTGAGGACCATGGATGACATCAATGTTCCCGGGATCTCTCAATCTTGTTATGACGTGGATGCGGCTTCAGATCAAGGTTTGTCAACCGATGGTGTTGATGATGATGATCTGCAAACGGCCTCCTATATAGTTTCAAGAATGAAGAGTCATATCTCAATGCAACTCCTCATCATACAGGTCATTACTGATTTGTACAAGAACCATACCCAACCTTTCTCAGAAGGCAACATTTCCATCATTCTTGAGATATTTTCTTCCATTTCCACACATGCCCAGAAACTTAATTCTGACACAATCCTTCAGAAGAAGCTACAGAAAGCTTGCTCCATCCTAGAGATATCCGACCCACCCATGGTTCACTTTGAAAATGAGTCTTACCAGAGCTACCTCAACTTTCTCCAGAATATGCTTGCGGATAACCCGTTGCTCTCTAATTCAACTCTTATTGAATCCGAACTTGTCACTGTCTGTGAACAAATTTTGCATATTTACTTGAAGTGCACCGGGGCACCGAATGAGCTGAAAGAAACCAACCAGCCTGTACTACATTGGATCCTTCCGTTGGGTTCAGCAAGGAAGGAAGAACTGGCTGCTCGAACCTCTCTAGTTGTCTCGGCACTGCGGGTTCTATGCGGGTTTGAAAGGGAACTATTTAAAAGGTATGTTCCACAGCTTTTTCCATTGTTGGTAGAGCTTGTAAGGAGTGAACATAGCTCTGGAGAAGTTCAGGTTGTTTTGAGCATCATATTTCAATCATGTATAGGGCCAATAATTATGCAATAA 4131 41.83 MDNAGPVWRSNERFLNAIKQFLCLSLLKNSALSAMAIFQLQCCIFTSLLTKFRSGLKAEVGIFFPMLVLRVLENVLQPSFLQKMTVLNLLDKISQDSQTMVDIFVNYDCDVDSPNIFERIVNGLLKTALGPPSGSTTTLSPAQDITFRLESVKCLVSIIKSMGTWMDQQMKLDDTNILKTSENDASPENQLSGEETAAVDSELQSDGNSEFSDAATLEQRRAYKIELQKGISLFNRKPSRGIEFLISTKKVGGSPEEVASFLKNTNGLNETVIGDYLGEREEFPLKVMHAYVDSFNFKVMDFGEAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPGSFTSADTAYVLAYSVIMLNTDAHNNMVKEKMTKADFIRNNRGIDDGKDLPDEYLGALYDQIVRNEIKMNSDSSASQSKQATSINKLLGLDGILNLVSWKQTEEKAVGANGLLIRHIQEQFKAKSGKSESVYHAVTDVTILRFMVEVCWGPMLAAFSVTLDQSDDKLATSQCLLGFRYAVHVTAVMGLQTQRDAFVTSMAKFTYLHCAADMKQKNVEAVKAIISIAIEDGDFLQEAWEHIFTCLSRIENLQLLGEGAPSDASFLTTSNIETEEKALKSAGLSSLKRKGSLQNPAVMAVVRGGSYDSTSLGANSSPGPVTPDQINHLISNLHLLHQIGNFELNHVFAHSQSLNSEAIVAFVKALCKVAIAELQSPTDPRVFSLTKLVEVAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSSSTEIRELIVRCISQMVLSRVNNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETTTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCYEMAGDNVSSNSPDEPTPTPTPTPTDKDDYASYWVPLLAGLSKLTSDPRSPIRKSSLEVLFNILKDHGHLFSRQFWVGVINSVVFPIFNSLHDKKEVDMNENDEYTEGSTWDSDTCAVAADCLVDLFVSFFNVIRSQLPGVVTILTGFIRSPIQGPASTGVAALMRLAGDLANRLTENEWREIFLALKEAATLTVPGFLKVLRTMDDINVPGISQSCYDVDAASDQGLSTDGVDDDDLQTASYIVSRMKSHISMQLLIIQVITDLYKNHTQPFSEGNISIILEIFSSISTHAQKLNSDTILQKKLQKACSILEISDPPMVHFENESYQSYLNFLQNMLADNPLLSNSTLIESELVTVCEQILHIYLKCTGAPNELKETNQPVLHWILPLGSARKEELAARTSLVVSALRVLCGFERELFKRYVPQLFPLLVELVRSEHSSGEVQVVLSIIFQSCIGPIIMQ 1376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4360529 4370816 - PI0028457.1 Cmetu01g0851 346125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0851 1376 FunFam Brefeldin A-inhibited guanine nucleotide-exchange 1 298 416 - -
Cmetu01g0851 1376 Pfam Domain of unknown function (DUF1981) 774 856 IPR015403 -
Cmetu01g0851 1376 CDD Sec7 223 405 IPR000904 GO:0005085|GO:0032012
Cmetu01g0851 1376 SUPERFAMILY Sec7 domain 220 411 IPR035999 GO:0005085|GO:0032012
Cmetu01g0851 1376 Pfam Sec7 domain 224 405 IPR000904 GO:0005085|GO:0032012
Cmetu01g0851 1376 MobiDBLite consensus disorder prediction 923 943 - -
Cmetu01g0851 1376 Pfam Guanine nucleotide exchange factor in Golgi transport N-terminal 1 116 IPR032691 -
Cmetu01g0851 1376 ProSiteProfiles SEC7 domain profile. 216 403 IPR000904 GO:0005085|GO:0032012
Cmetu01g0851 1376 Gene3D - 298 418 IPR023394 -
Cmetu01g0851 1376 SUPERFAMILY ARM repeat 570 1368 IPR016024 -
Cmetu01g0851 1376 Gene3D - 208 297 - -
Cmetu01g0851 1376 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 6 1242 - -
Cmetu01g0851 1376 SMART sec7_5 220 405 IPR000904 GO:0005085|GO:0032012
Cmetu01g0851 1376 Pfam C-terminal region of Mon2 protein 940 1011 IPR032817 -
Cmetu01g0851 1376 MobiDBLite consensus disorder prediction 180 211 - -
Cmetu01g0851 1376 Pfam BIG2 C-terminal domain 1169 1367 IPR046455 -
Cmetu01g0851 1376 Gene3D - 764 985 IPR011989 -
Cmetu01g0851 1376 FunFam Brefeldin A-inhibited guanine nucleotide-exchange protein 1 208 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0851 K18442 - - csv:101212521 2611.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0851 Cmetu-Chr1:4360529 Cmetu06g0654 Cmetu-Chr6:1685741 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010065 0 1 1 0 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33