Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0859 ATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACCTGAAATGTAAACCAGGATCGCGTCTAAACCTTGTAATTGGGCCTAATGGATCTGGTAAAAGCTCTATTGTATGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCAACCAGTGTTGGAGCATACGTGAAGCGTGGGGAGGAGTCTGGTTATGTTAGGATAACCTTAAGAGGGAATACTAAAGAGGAAAAGATTACAATTACACGTAAAATGGACACGCACAACAAATCTGAGTGGTTGTTCAATGGAAAAGTTGTGCCGAAAAAAGATGTAGCTGGAATCATTCAAAGGTTTAATATTCAAGTTAATAATTTAACTCAATTTTTACCTCAGGACAGGGTTTGTGAGTTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACTGAAAAGGCAGTTGGTGACCCTCAACTTCCTATCCTACATCGTGCACTTGTTGATAAAAGTCATAGCATAAAAAGTATCGAAAGAGCTGTTGAGAAAAATGGTGACACCCTAGATCAGTTGAAGGCATTAAATGTTGAGCAAGAGAAAGATGTTGAGCGTGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAACTGCCATGGCTCAAGTATGACATGAAAAAGGCTGAATACTTGGAAGTTAAGGAAAAAGAAAAGGAGGCCAAAAAGAAGTTAGATGAAGCTGCTAACACTTTGAATGATCTAAAGGAGCCAATTGAGAAACAAAAAATGGAGAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCGTATTAATGATAATCACAAGAAAAGGATGGAACTTCAGGAAACTGAAAACCGTTTGGGAGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACTTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCTTACGAGCTAAAGAGGAACTTGAAGCTGCTGAGTTCGAACTTCAGAATTTGCCTGCTTATGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGTTGGAAGTTTCTGCAAGTCAGAAGAGACTTATGAAGTCAGAGATTGAGAAAAATATTTCCCAAAAAAGAAATACTTTGAGGCAATGTTTGGATAGGTTAAAGGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAAAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCTAATCGGACTCATGCTGACTACCTAGAAGGTCATATTCCATCCTATGTCTGGAAGTCCTTCATAACCCAAGATTCTGATGATCGCGACATTATGGTAAAAAACTTGGGCTCATTTGGTGTTCCTGTCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGTTGTCTGAGGAGGTTCGTGCATTTGGCATATATTCTCGGCTGGACCAAATTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAAAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGCCATATGTCTGGAAGTGTGGAGCCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGCTCTAGGAAAAGTGAGCTAGAAGAATCTGTTTCTGCCTTAGAAGAAAATTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGGGAAAACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGACGTGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACTTGGATACTGTTGTGGCCAAGCTTGTCGACCAAGCTGCAAATTTTAACATTCAGAGGTTCCATTGTGTAATTGAAATTAAGCATTTGCTTCTTGAAGCCGTTTCCTATAGACAGAGCTTGACTAAGAACCATATGTCTTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTTAATCTAAAGCAGCATGAAAAGGTAGCTCTGCAAGCGTCAGTGCAGTTCGAGTACTGTGAGTTGCAAAAGGAAGTTGAGGACTATCGACAGCAACTCTCAGCTGCCAAGAAGTATGCAGAATCAATTGTTGCTATCACACCTGAACTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAATTGGAGGCCGCTGTTCAAGATAATATCTCTCAAGCTAATTCCATTCTGTTCTTAAACCATAATGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAACGCCATTGCACGGAAACTAGAGGCTGATAAACATGAACTTAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACATTAAGAAAACTTGTTTCTCAGATAAATGAAACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAGCATGAGATGGACTTTGATCAATTTGGAATACTTATTAAAGTGAAGTTCAGACAATCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGCTCGGTGTCGACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACCAATACACCACAGTGTTTCCTACTGACTCCAAAGTTACTTCCAGAACTGGAATATAGTGAGGCCTGTAGTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCTAGAGCATGGAGCAATGGAGATAGCTGGGGAACGTTGATGAACTACGTAGGAGAAAGCCGATGTTGA 3108 40.35 MPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDTHNKSEWLFNGKVVPKKDVAGIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRALVDKSHSIKSIERAVEKNGDTLDQLKALNVEQEKDVERVRQRDELLKKVESMKKKLPWLKYDMKKAEYLEVKEKEKEAKKKLDEAANTLNDLKEPIEKQKMEKAKLDAKTKKYSTRINDNHKKRMELQETENRLGVQVQGKLKEMEDLRKQEESRQQRILRAKEELEAAEFELQNLPAYEHPKDEIERLRAQILELEVSASQKRLMKSEIEKNISQKRNTLRQCLDRLKDMENTNTKLLQALKNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSDDRDIMVKNLGSFGVPVLNYVGGERRTNQHFELSEEVRAFGIYSRLDQIFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHMSGSVEPVDRSRLLLCNLDAGEIDGLRSRKSELEESVSALEENCKSCQNELRLIEDEEAKLRKHRENILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLVDQAANFNIQRFHCVIEIKHLLLEAVSYRQSLTKNHMSSIEIEAKIRELEVNLKQHEKVALQASVQFEYCELQKEVEDYRQQLSAAKKYAESIVAITPELEKEFLEMPTTIEELEAAVQDNISQANSILFLNHNVLEEYEHRQRQINAIARKLEADKHELRKCMAEVDELKGNWLPTLRKLVSQINETFSRNFQEMAVAGEVLLDEHEMDFDQFGILIKVKFRQSGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACSILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC 1035
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25864187 25876510 - PI0029098.1 Cmetu01g0859 346133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0859 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 729 986 IPR027417 -
Cmetu01g0859 1035 Coils Coil 309 336 - -
Cmetu01g0859 1035 Coils Coil 381 408 - -
Cmetu01g0859 1035 Coils Coil 727 754 - -
Cmetu01g0859 1035 Coils Coil 824 861 - -
Cmetu01g0859 1035 Gene3D - 829 1004 IPR027417 -
Cmetu01g0859 1035 FunFam Structural maintenance of chromosomes 5 831 1002 - -
Cmetu01g0859 1035 Gene3D - 4 192 IPR027417 -
Cmetu01g0859 1035 Gene3D - 564 686 - -
Cmetu01g0859 1035 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1028 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Cmetu01g0859 1035 Coils Coil 232 259 - -
Cmetu01g0859 1035 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 236 IPR027417 -
Cmetu01g0859 1035 Coils Coil 189 209 - -
Cmetu01g0859 1035 Pfam RecF/RecN/SMC N terminal domain 5 976 IPR003395 -
Cmetu01g0859 1035 Coils Coil 602 678 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0859 K22803 - - csv:101210248 1965.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0859 Cmetu-Chr1:25864187 Cmetu07g2223 Cmetu-Chr7:3190757 2.80E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1074 . . . . . . . . . Cmo17g00945 . . . . Sed07g0592 . Cpe12g00841 Bhi09g00709 Tan06g0629 Cmetu01g0859 . Hepe03g1771 . . . . . . . . . . Cone20ag1052 . . Lsi02g02546 . . . . . . . . . . . . . . . Cma17g00970 . Car17g00928 . . . . . . . . . Cla09g00408 Cam09g0435 Cec09g0438 Cco09g0425 Clacu09g0440 . Cre09g0421 . . Chy01g01830 Cme01g02432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g0859 . 1 1026 Structural Maintenance of Chromosomes family AT5G15920 68.9 0.0e+00 1359.4
Cmetu07g2223 . 10 1014 Structural Maintenance of Chromosomes family AT5G07660 63.5 0.0e+00 1198.7
Cmetu07g2223 . 10 1014 Structural Maintenance of Chromosomes family AT5G61460 66.5 0.0e+00 1268.8