Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0918 ATGAACAAGAGGGCTAGAATTGATGATTCCAATAAGGCAGTGGTCAATGTCTGGAAGCGGGAGGTTGGAGAGCTCTCCACTAGGAATTTTGCCCACCGTCTTGGTGCTTTGGAGGATCTCGTGCTCCGACTTGATGTTTACAAGAAACTGGAGAGGCACAAGGGTTGTGTGAACACCGTGAGCTTTAATGCTGCTGGTGATATTTTAGTGTCAGGCTCTGATGATAGGCGGGTGATTCTCTGGAATTGGGAAACCGGGCGTGTCAAGCTCTCTTTTCAGTCTGGTCACAATAACAATGTTTTTCAAGCAAAAATCATGCCTTACACGGATGATCGAAGCATTGTGACTTGTGCTGCAGATGGGCAGGTGAGGCATGCTCAGATTCTGAATAGCGGGCATGTGGAAACTTCACTACTCGGCAGTCATCAAGGGCGAGCTCATAAGTTGGCCATTGAACCTGGTAGTCCTTATATGTTCTATACTTGCGGTGAAGATGGATTGGTGCAACGTTTTGATCTAAGAACTGGGGCTGCTGTTGAGCTGTTCACTTGCCAATCAGTTGACAATAGGGCAGGTTACATGCCATTGATTCAGCTAAATGCAATTGTGATTGATCCCAGAAATCCAAATCTCTTTGTTGTTGCTGGTTCAGATGAGTATGCGCGATTGTACGATATTCGCAAGTCTGGGGAGGATGGTTCAACTGATTTTGGTCAACTGGCAGACTGCTATTGCCCCCCTCACTTGATTGGCGATGAGCAAGTGGGAATAACAGGTCTAGCCTTCTCAGAGCTGAGTGAGCTCCTTGTCTCATACAATGATGAATCCATATATCTCTTTAATAGGGATATGGGTTTGGGCCCAAACCCAAATCCAGCGCCCCCACTATCTCTGAGTAGTGATGCAAGTGAAATGGGAGCTGAACACGTTGACAAGGTTATTCCACAAGTCTATAAAGGACATAGGAACTGTGAGACAGTTAAAGGGGTCAATTTTTTTGGACCTAAATGTGAGTATGTCGTTAGTGGTTCTGATTGTGGCAGAATATTTATATGGAGGAAAAAAGGTGGAGAGCTAATCCGTGTCATGGAAGCTGACAAGGATGTTGTGAACTGCATCGAGCCCCATCCTCATATGACCATGCTTGCTAGTAGTGGAATTGAAAGTGATGTCAAGATATGGACTCCAAAGGCCCATGAAAGAGCTACTCTTCCTGAGAAAATTGAACAGAAACCAAAGCCTAGAGGATGGATGGAACGCTTAGCGTTACCGGAGGAACTGATGCAACTGTTTTCACTGCGAAGACAGAATTTGACCCCTGAACGTGGAAGAGAACCTCCTACTGTAAGTAGGGAACTTCTAGAGTTGATAATGACATTCAACAATGGCAACAGCGATGACTCTTCATCAGATTATAATGGTGATGATACTGGTGAAGATGATTGTGATATCAATTGA 1458 44.92 MNKRARIDDSNKAVVNVWKREVGELSTRNFAHRLGALEDLVLRLDVYKKLERHKGCVNTVSFNAAGDILVSGSDDRRVILWNWETGRVKLSFQSGHNNNVFQAKIMPYTDDRSIVTCAADGQVRHAQILNSGHVETSLLGSHQGRAHKLAIEPGSPYMFYTCGEDGLVQRFDLRTGAAVELFTCQSVDNRAGYMPLIQLNAIVIDPRNPNLFVVAGSDEYARLYDIRKSGEDGSTDFGQLADCYCPPHLIGDEQVGITGLAFSELSELLVSYNDESIYLFNRDMGLGPNPNPAPPLSLSSDASEMGAEHVDKVIPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWRKKGGELIRVMEADKDVVNCIEPHPHMTMLASSGIESDVKIWTPKAHERATLPEKIEQKPKPRGWMERLALPEELMQLFSLRRQNLTPERGREPPTVSRELLELIMTFNNGNSDDSSSDYNGDDTGEDDCDIN 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5031783 5040201 + PI0015362.1 Cmetu01g0918 346192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0918 485 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515
Cmetu01g0918 485 Pfam WD domain, G-beta repeat 50 82 IPR001680 GO:0005515
Cmetu01g0918 485 Pfam WD domain, G-beta repeat 316 352 IPR001680 GO:0005515
Cmetu01g0918 485 Gene3D - 40 397 IPR015943 GO:0005515
Cmetu01g0918 485 MobiDBLite consensus disorder prediction 461 485 - -
Cmetu01g0918 485 SUPERFAMILY WD40 repeat-like 42 394 IPR036322 GO:0005515
Cmetu01g0918 485 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 87 - -
Cmetu01g0918 485 SMART WD40_4 356 395 IPR001680 GO:0005515
Cmetu01g0918 485 SMART WD40_4 177 225 IPR001680 GO:0005515
Cmetu01g0918 485 SMART WD40_4 43 82 IPR001680 GO:0005515
Cmetu01g0918 485 SMART WD40_4 242 281 IPR001680 GO:0005515
Cmetu01g0918 485 SMART WD40_4 311 353 IPR001680 GO:0005515
Cmetu01g0918 485 SMART WD40_4 85 127 IPR001680 GO:0005515
Cmetu01g0918 485 SMART WD40_4 131 172 IPR001680 GO:0005515
Cmetu01g0918 485 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 11 432 IPR045151 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0918 K11804 - - csv:101212571 897.116
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0918 Cmetu-Chr1:5031783 Cmetu11g1958 Cmetu-Chr11:6073170 4.20E-123 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g212 . Blo15g00392 Bda06g00470 . Bpe07g00706 . . . Cmo19g00770 . . . . . Sed04g3828 . Cpe15g00612 Bhi05g01673 Tan02g0645 Cmetu01g0918 . Hepe02g0403 . . . . . . . . . . . Cone3ag0974 . . Csa07g00126 . Cme01g01222 . . . . . . . . . . . . Cma19g00757 . Car19g00591 . . . . . . . . . . . . . . . . Lsi11g01221 . Chy01g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002748 1 4 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 3 2 3 2 2 57