Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0947 ATGCTAATTCTTCCTATGTTTGATCATGCCTTCCAAAATGGGCAAATTTGGGAGGTTGTAGATCAAGTTATAATTAAAACAATTGTCGACAAACTTCTTGATCCTCCAGAAGAGGTGACTGCTGAATATGATGAGCCATTGAGAATAGAACTTTTACAGCTTGCAACCTTACTTCTCAAGGAAGATAGTGCCAGTAAGCAGTGGGCATTTGAGAATGTCTGCCATTTTTTGGAGGCCTATCAAGCCCTTGAAAAAATCATCCTTCAGGTTGCATTGGTGATAGAGCCTAAGGACAAGGAGGCAATTGCCATGTATAAGCAAGCATTAGAGCTTCTTTCACAGGCTCTAGAGGTGTGGCCAAATGTTTAG 369 40.92 MLILPMFDHAFQNGQIWEVVDQVIIKTIVDKLLDPPEEVTAEYDEPLRIELLQLATLLLKEDSASKQWAFENVCHFLEAYQALEKIILQVALVIEPKDKEAIAMYKQALELLSQALEVWPNV 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20019366 20020316 - PI0023563.1 Cmetu01g0947 346221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0947 122 Pfam Tra1 HEAT repeat ring region 1 60 IPR046805 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0947 K08874 - - csv:101223090 150.984
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0947 Cmetu-Chr1:20019366 Cmetu04g0334 Cmetu-Chr4:3736191 5.50E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1109 . . . . . . . . . . Cma03g00687 Cma07g00429 Car03g00633 Car07g00376 Sed14g1192 Cpe19g00858 Cpe10g00662 Bhi03g00868 Tan03g2072 Cmetu01g0947 . Hepe04g1590 . . Cla01g01978 Cam01g2072 Cec04g1731 Cco04g1796 Clacu01g2093 Cmu01g1969 Cre04g1644 . . . . Lsi01g00603 . . Cme08g00925 . Blo06g00302 . . Bpe10g00154 . . . . Cmo03g00712 Cmo07g00426 . . . . . . . . . . . . . . . . . . . . . Csa06g03323 Chy02g00575 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008660 0 1 1 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 2 1 1 1 1 0 1 1 1 2 2 1 35