Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g0968 ATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAAACGACGTGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACGCCTGAGAGATGGCAAAATATCGCCACTGCGGTCGGGGGGAAGTCGGCCGACGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTTCGGCAGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACAGAGGCACTAGCAATCGAGATGAAGAGTTGAGGTTGTTAAAGTATCTGAAACTTCAATGA 291 48.11 MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6077488 6079632 - PI0017426.1 Cmetu01g0968 346242

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g0968 96 SUPERFAMILY Homeodomain-like 15 68 IPR009057 -
Cmetu01g0968 96 SMART sant 11 63 IPR001005 -
Cmetu01g0968 96 Pfam Myb-like DNA-binding domain 14 57 IPR001005 -
Cmetu01g0968 96 CDD SANT 14 61 IPR001005 -
Cmetu01g0968 96 Gene3D - 7 74 - -
Cmetu01g0968 96 ProSiteProfiles Myb-like domain profile. 7 61 IPR001005 -
Cmetu01g0968 96 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 84 IPR044636 GO:0003700
Cmetu01g0968 96 FunFam Transcription factor SRM1 7 74 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g0968 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0968 Cmetu-Chr1:6077488 Cmetu03g1668 Cmetu-Chr3:1884442 1.60E-26 dispersed
Cmetu01g0968 Cmetu-Chr1:6077488 Cmetu01g0623 Cmetu-Chr1:6135089 7.70E-21 proximal
Cmetu01g0968 Cmetu-Chr1:6077488 Cmetu11g2150 Cmetu-Chr11:27415396 5.40E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g948 Blo01g01563 . Bda01g00528 . Bpe02g00390 . . Bma01g02321 . . Cma01g01911 Cma09g00157 Car01g01492 . Sed05g2314 Cpe06g00112 . Bhi04g00244 Tan02g0788 Cmetu01g0968 . Hepe02g0493 . Lcy13g1988 . . . . . . . Cone4ag1912 . Cone17ag1343 Cone20ag0138 Lsi04g01666 Csa03g04211 Chy04g00508 . Blo17g00801 Blo18g00814 Bda08g01283 Bda01g01494 Bpe02g01690 Bpe05g00091 Bma01g00763 . . Cmo01g01973 Cmo09g00156 . . . Car09g00139 . Cpe02g00126 . . . . . . . Cla05g01939 Cam05g2083 Cec05g2096 Cco05g2147 Clacu05g2079 Cmu05g1953 Cre05g2074 . . . Cme04g00564
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000218 6 6 3 6 4 5 7 4 5 6 5 5 7 7 7 9 5 4 8 4 6 3 11 1 3 6 7 11 9 3 173
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7268 PF00249 Myb_DNA-binding 8.00E-06 CL0123 Cmetu TF