Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1052 ATGGCCAGCATCAAAGTCCATGGACTCGCCCTTTCCACACCCACATGCAAGGTTTTAGCTTGTCTCTACGAGAAAGACCTCGAATTCGAGTTTATCAATGTCAAATTGCACGAAGGCGAACATAAGAAACCCCCTTTTCTCTCCATCAATCCTTTTGGTCAAATTCCTGGGTTCCAAGATGGGGATTTAACACTTTTTGAATCCAGAGCAATCACACAATACATCTCCGCAAATTATGCTAATAGTGGAACTCAATTGATTCCTCAAGACTTCAAAGAAGCAGCTGCATTATTAACCTGGATTGAAGTGGAGAGTCATCATTTTGATCCACCAGCCTCTAAACTTGTGTATGAGCTGTGTTTGAAGCCAAAGCTAGGGTGGGGTGAGACAGACGGTGCAGTGGTTGAGCAAAAGGAAGCTGAGTTGGCCAAAGTTGTTGATATCTATGAAAAAAGGTTGGCTGAATCCAAGTACTTGGCTGGGGAAGCCTTCAGTTTGGCTGATCTTCACCATATCCCAACGTTAGGGTTCTTGTTGGAGACACAAACCAAGAAATTGTTTGAAGCTCGGCCCCATGTCAATGCTTGGTTGGCTGATATCATGGCCAGGCCGGCTTGGGCTAAGGTGCTTGCTTTGCGTAAGTAA 645 44.96 MASIKVHGLALSTPTCKVLACLYEKDLEFEFINVKLHEGEHKKPPFLSINPFGQIPGFQDGDLTLFESRAITQYISANYANSGTQLIPQDFKEAAALLTWIEVESHHFDPPASKLVYELCLKPKLGWGETDGAVVEQKEAELAKVVDIYEKRLAESKYLAGEAFSLADLHHIPTLGFLLETQTKKLFEARPHVNAWLADIMARPAWAKVLALRK 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24743510 24744715 - PI0027388.1 Cmetu01g1052 346326

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1052 214 SFLD Main (cytGST) 1 212 - -
Cmetu01g1052 214 SUPERFAMILY Thioredoxin-like 1 88 IPR036249 -
Cmetu01g1052 214 FunFam Glutathione S-transferase F2 88 210 - -
Cmetu01g1052 214 Gene3D - 90 214 - -
Cmetu01g1052 214 SUPERFAMILY GST C-terminal domain-like 74 213 IPR036282 -
Cmetu01g1052 214 Gene3D Glutaredoxin 2 87 - -
Cmetu01g1052 214 CDD GST_N_Phi 4 78 - -
Cmetu01g1052 214 PANTHER GLUTATHIONE S-TRANSFERASE RHO 3 211 - -
Cmetu01g1052 214 Pfam Glutathione S-transferase, N-terminal domain 14 76 IPR004045 -
Cmetu01g1052 214 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 214 IPR010987 -
Cmetu01g1052 214 Pfam Glutathione S-transferase, C-terminal domain 111 204 IPR004046 -
Cmetu01g1052 214 FunFam Glutathione S-transferase F2 3 87 - -
Cmetu01g1052 214 SFLD Main.5: Phi-like 1 212 - -
Cmetu01g1052 214 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Cmetu01g1052 214 CDD GST_C_Phi 92 210 IPR034347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1052 K00799 - - csv:101212536 414.461
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1052 Cmetu-Chr1:24743510 Cmetu01g1572 Cmetu-Chr1:24735282 2.60E-48 dispersed
Cmetu01g1052 Cmetu-Chr1:24743510 Cmetu01g2501 Cmetu-Chr1:24749514 4.30E-96 tandem
Cmetu01g1857 Cmetu-Chr1:24740797 Cmetu01g1052 Cmetu-Chr1:24743510 2.20E-79 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g260 Blo05g00314 . . . . . . . . . . . . . Sed09g1225 Cpe17g00796 . Bhi09g00856 Tan06g0841 Cmetu01g1052 . Hepe03g1912 . . Cla09g00566 Cam09g0601 Cec09g0585 Cco09g0579 Clacu09g0600 . Cre09g0574 Cone17ag0506 Cone20ag0932 . . Lsi02g02380 Csa07g01816 . Cme01g02340 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g01670 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g2501 . 1 210 Glutathione S-transferase Gene Family AT4G02520 59.6 5.6e-64 241.1
Cmetu01g1857 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 1.3e-63 240.0
Cmetu01g1052 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.1 7.6e-61 230.7
Cmetu01g2501 . 1 211 Glutathione S-transferase Gene Family AT2G02930 60.9 1.8e-65 246.1
Cmetu01g1052 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.7 1.6e-63 239.6
Cmetu01g1857 . 1 210 Glutathione S-transferase Gene Family AT2G02930 57.3 3.7e-63 238.4
Cmetu01g1857 . 5 206 Glutathione S-transferase Gene Family AT1G02950 52.2 5.0e-59 224.9
Cmetu01g2501 . 6 215 Glutathione S-transferase Gene Family AT1G02950 54.0 8.6e-59 224.2
Cmetu01g1052 . 5 206 Glutathione S-transferase Gene Family AT1G02950 55.2 8.0e-57 217.6
Cmetu01g2501 . 1 211 Glutathione S-transferase Gene Family AT1G02930 58.3 6.1e-63 237.7
Cmetu01g1857 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 1.4e-62 236.5
Cmetu01g1052 . 1 210 Glutathione S-transferase Gene Family AT1G02930 55.7 7.5e-61 230.7
Cmetu01g2501 . 1 211 Glutathione S-transferase Gene Family AT1G02920 60.7 1.6e-66 249.6
Cmetu01g1857 . 1 210 Glutathione S-transferase Gene Family AT1G02920 56.2 1.2e-63 240.0
Cmetu01g1052 . 1 210 Glutathione S-transferase Gene Family AT1G02920 57.1 4.7e-63 238.0
Cmetu01g1857 . 1 215 Glutathione S-transferase Gene Family AT2G47730 57.9 1.4e-67 253.4
Cmetu01g2501 . 4 215 Glutathione S-transferase Gene Family AT2G47730 58.7 7.5e-66 247.7
Cmetu01g1052 . 1 214 Glutathione S-transferase Gene Family AT2G47730 54.9 6.5e-62 234.6
Cmetu01g1572 . 5 215 Glutathione S-transferase Gene Family AT3G62760 59.7 9.0e-73 270.4
Cmetu08g0148 . 3 179 Glutathione S-transferase Gene Family AT2G29490 52.2 5.2e-44 174.9
Cmetu08g0148 . 6 163 Glutathione S-transferase Gene Family AT2G29470 50.9 1.3e-37 153.7
Cmetu06g0989 . 2 205 Glutathione S-transferase Gene Family AT2G29450 50.5 2.6e-51 199.1
Cmetu08g0148 . 3 159 Glutathione S-transferase Gene Family AT2G29440 53.5 2.3e-39 159.5
Cmetu08g0413 . 4 216 Glutathione S-transferase Gene Family AT3G09270 52.6 2.7e-64 242.3
Cmetu08g1346 . 1 221 Glutathione S-transferase Gene Family AT3G09270 53.8 7.8e-64 240.7
Cmetu08g0468 . 5 218 Glutathione S-transferase Gene Family AT3G09270 54.0 2.3e-60 229.2
Cmetu08g0998 . 3 215 Glutathione S-transferase Gene Family AT3G09270 51.4 2.6e-59 225.7
Cmetu08g0227 . 3 207 Glutathione S-transferase Gene Family AT3G09270 52.4 5.4e-57 218.0
Cmetu08g0211 . 1 218 Glutathione S-transferase Gene Family AT3G09270 50.2 6.0e-56 214.5
Cmetu07g0951 . 1 216 Glutathione S-transferase Gene Family AT1G78380 68.1 5.4e-86 314.3
Cmetu07g1785 . 1 215 Glutathione S-transferase Gene Family AT1G78380 69.8 5.4e-86 314.3
Cmetu07g1476 . 1 201 Glutathione S-transferase Gene Family AT1G78380 63.6 7.3e-75 277.3
Cmetu09g1597 . 4 221 Glutathione S-transferase Gene Family AT1G78380 54.6 4.8e-66 248.1
Cmetu07g0922 . 5 215 Glutathione S-transferase Gene Family AT1G78380 53.3 7.9e-61 230.7
Cmetu07g0212 . 1 166 Glutathione S-transferase Gene Family AT1G78380 64.5 2.5e-54 209.1
Cmetu07g1785 . 8 215 Glutathione S-transferase Gene Family AT1G78370 63.5 3.1e-78 288.5
Cmetu07g0951 . 1 214 Glutathione S-transferase Gene Family AT1G78370 60.7 1.5e-75 279.6
Cmetu07g1476 . 7 201 Glutathione S-transferase Gene Family AT1G78370 61.5 8.3e-71 263.8
Cmetu09g1597 . 7 220 Glutathione S-transferase Gene Family AT1G78370 52.8 5.4e-62 234.6
Cmetu07g0922 . 8 209 Glutathione S-transferase Gene Family AT1G78370 51.5 1.2e-56 216.9
Cmetu07g0212 . 7 166 Glutathione S-transferase Gene Family AT1G78370 57.5 2.4e-46 182.6
Cmetu07g1785 . 1 215 Glutathione S-transferase Gene Family AT1G78340 65.1 1.8e-81 299.3
Cmetu07g0951 . 1 216 Glutathione S-transferase Gene Family AT1G78340 62.0 7.0e-78 287.3
Cmetu07g1476 . 1 201 Glutathione S-transferase Gene Family AT1G78340 57.9 2.7e-69 258.8
Cmetu09g1597 . 4 219 Glutathione S-transferase Gene Family AT1G78340 52.3 2.1e-61 232.6
Cmetu07g0922 . 5 208 Glutathione S-transferase Gene Family AT1G78340 53.2 6.6e-60 227.6
Cmetu07g0212 . 1 177 Glutathione S-transferase Gene Family AT1G78340 55.9 3.3e-51 198.7
Cmetu06g0989 . 1 156 Glutathione S-transferase Gene Family AT1G78340 50.3 4.0e-41 165.2
Cmetu07g1785 . 3 206 Glutathione S-transferase Gene Family AT1G78320 54.4 5.0e-59 224.6
Cmetu07g1785 . 1 219 Glutathione S-transferase Gene Family AT1G17180 70.8 5.6e-91 330.9
Cmetu07g0951 . 1 218 Glutathione S-transferase Gene Family AT1G17180 62.4 1.6e-82 302.8
Cmetu07g1476 . 1 203 Glutathione S-transferase Gene Family AT1G17180 65.7 1.9e-78 289.3
Cmetu09g1597 . 4 224 Glutathione S-transferase Gene Family AT1G17180 54.3 5.7e-67 251.1
Cmetu07g0922 . 5 209 Glutathione S-transferase Gene Family AT1G17180 54.1 3.8e-63 238.4
Cmetu07g0212 . 1 166 Glutathione S-transferase Gene Family AT1G17180 61.4 2.1e-53 206.1
Cmetu07g1785 . 1 218 Glutathione S-transferase Gene Family AT1G17190 60.6 7.1e-78 287.3
Cmetu07g0951 . 3 217 Glutathione S-transferase Gene Family AT1G17190 55.8 1.3e-71 266.5
Cmetu07g1476 . 2 201 Glutathione S-transferase Gene Family AT1G17190 54.9 4.5e-64 241.5
Cmetu07g0922 . 5 213 Glutathione S-transferase Gene Family AT1G17190 50.7 2.9e-55 212.2
Cmetu07g0212 . 2 166 Glutathione S-transferase Gene Family AT1G17190 53.9 6.1e-45 177.9
Cmetu07g0951 . 3 214 Glutathione S-transferase Gene Family AT3G43800 55.1 4.8e-69 258.1
Cmetu07g1785 . 1 215 Glutathione S-transferase Gene Family AT3G43800 53.0 2.9e-66 248.8
Cmetu07g1476 . 3 189 Glutathione S-transferase Gene Family AT3G43800 53.4 3.1e-60 228.8
Cmetu07g1785 . 6 219 Glutathione S-transferase Gene Family AT1G53680 56.5 3.0e-68 255.4
Cmetu09g1597 . 1 224 Glutathione S-transferase Gene Family AT1G53680 53.9 2.0e-64 242.7
Cmetu07g0951 . 4 218 Glutathione S-transferase Gene Family AT1G53680 53.9 3.5e-64 241.9
Cmetu07g1476 . 1 201 Glutathione S-transferase Gene Family AT1G53680 53.9 3.7e-58 221.9
Cmetu11g0017 . 51 217 Glutathione S-transferase Gene Family AT2G02390 66.5 3.2e-58 221.9
Cmetu11g0442 . 50 218 Glutathione S-transferase Gene Family AT2G02390 59.8 4.3e-55 211.5
Cmetu11g0017 . 8 220 Glutathione S-transferase Gene Family AT2G02380 62.4 1.6e-72 269.6
Cmetu11g0442 . 6 218 Glutathione S-transferase Gene Family AT2G02380 57.7 1.4e-68 256.5
Cmetu06g2239 . 18 228 Glutathione S-transferase Gene Family AT2G02380 50.9 2.5e-54 209.1
Cmetu07g1782 . 1 237 Glutathione S-transferase Gene Family AT5G41210 67.5 7.4e-92 334.0
Cmetu07g1782 . 1 237 Glutathione S-transferase Gene Family AT5G41240 66.7 2.8e-89 326.6
Cmetu08g1266 . 9 233 Glutathione S-transferase Gene Family AT5G02780 66.7 4.6e-83 304.7
Cmetu08g1525 . 4 232 Glutathione S-transferase Gene Family AT5G02780 67.1 3.9e-82 301.6
Cmetu10g0072 . 75 294 Glutathione S-transferase Gene Family AT5G02780 63.5 1.5e-78 289.7
Cmetu08g1557 . 14 206 Glutathione S-transferase Gene Family AT5G02780 67.2 1.7e-72 269.6
Cmetu10g0072 . 17 292 Glutathione S-transferase Gene Family AT3G55040 59.2 1.6e-85 313.2
Cmetu08g1525 . 3 230 Glutathione S-transferase Gene Family AT3G55040 59.0 6.8e-76 281.2
Cmetu08g1266 . 4 231 Glutathione S-transferase Gene Family AT3G55040 58.3 2.4e-73 272.7
Cmetu08g1557 . 4 206 Glutathione S-transferase Gene Family AT3G55040 57.4 6.8e-68 254.6
Cmetu08g1525 . 4 232 Glutathione S-transferase Gene Family AT5G02790 68.3 7.3e-89 323.9
Cmetu08g1266 . 1 233 Glutathione S-transferase Gene Family AT5G02790 67.2 9.6e-89 323.6
Cmetu10g0072 . 67 294 Glutathione S-transferase Gene Family AT5G02790 61.1 7.3e-81 297.4
Cmetu08g1557 . 6 206 Glutathione S-transferase Gene Family AT5G02790 67.8 1.1e-76 283.5
Cmetu10g0567 . 1 212 Glutathione S-transferase Gene Family AT1G19570 68.1 3.8e-84 308.1
Cmetu10g0567 . 1 211 Glutathione S-transferase Gene Family AT1G75270 72.6 1.9e-88 322.4
Cmetu10g0567 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 8.9e-72 267.3
Cmetu06g2568 . 5 229 Glutathione S-transferase Gene Family AT5G16710 51.1 3.3e-66 248.8
Cmetu07g2081 . 1 249 Glutathione S-transferase Gene Family AT1G77290 66.5 5.0e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000808 1 3 1 2 2 3 3 3 3 3 2 3 3 3 3 3 3 7 3 3 3 3 2 2 6 3 3 5 5 1 90