Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1056 ATGGATTGGAGGTGGAGGGAGCTGATATCTCTCATCATTCTTTGCATTCTATGGTCGAAGCCTATCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAGGGTTTTGTACACCAGTTTAAACTCCCCCTCTCAGTTAACCCAGTGGAACGCAAATGGGGATGACCCTTGTGGACAATCATGGAAGGGGATTACTTGCTCCGGCTCACGGGTTACAGAAATAAACTTATCTGGCCTTGGACTCAGTGGATCGCTTGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGGATGTGAGTAATAACAATCTTGGAGGCGAGATTGTCTACAACCTTCCACCTAACCTGAAAAGACTAAATCTTGGACGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATGACTTCTCTTCAATACTTAAACATCAGTCATAATCAGCTTCAGGATCCATTGAATGATGTGTATGGGCAGCTAACTTCCCTATCCATATTGGACCTGTCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCACTTTCTGGCATCAGCTCTATGTATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTTCCTCTTGATAACCTGAATGTGGAAAATAACCGTTTCACTGGATGGATCCCTGAACCACTGAAAAACATCAACCTGCAGAAAAATGGGAACTCCTGGAACACCGGTCCTGCACCCCCTCCTCCACCTGGTACACCCCCAGCCACCAGAAGAAACCGAAGTCGCAATTCAGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGTATTAGTGGTGGTGCCATTGCAGGAATTATCATTTCTGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAGGAGAAGATCCAAGAGATCGTCAACGGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAAAATGACTGCGGCACAAGAAACGAAGTCGGAAGATTCTTCCTCCACATTTTATCCAACATCATTTGACACTTCTGCTGCAATTAATCTTAAGCCCCCACCTATTGATCGTCATAAATCATTTGACGAAGATGACTTTTCAAAACGAGCCCCAGTCAAGAAGGCTAGTGCTGCAGCTCCTATTAATGTAAAGTCATATTCAATAGCAGACCTTCAAATGGCGACAGGCAGCTTCAATGTTGATAATCTTCTTGGTGAGGGATCGGTCGGACGTGTATATCGGGCTGAGTTTGATGACGGGAAGGTTCTTGCCGTGAAGAAAATAAATTCATCTGCACTACCTAGGGAATTATCCGAAGATTTCACTGATATTGTTTCTAAAGTCTCCCAGTTACACCATCCCAATATAACTGAACTCGTCGGTTATTGCTTAGAGCATGGGCAACATTTGCTTGTGTACGAGTTCCATAGAAATGGCTCGCTTTATGACTTCTTACATCTATCACTATCAGACGAATACAACAAACCTCTGATATGGAATTCACGCGTTAAGATTGCTCTGGGAACAGCACGCGCATTAGAGTATCTTCATGAAGTGTGCTCCCCATCAATTGTTCATAGAAACATCAAGTCTGCTAACATATTACTGGATGCCGAGCTCAGCCCCCATCTTTCTGATTCTGGACTGGAAAGCTTTATACCAAATGCAGATCAGGCATTAGATGGGAGTGGAAGTTCAGGATACACTGCGCCGGAGGTTACCATGTCGGGCCAATATACTCTGAAAAGTGATGTGTATAGTTTTGGAGTAGTAATGTTGGAACTGCTGACTGGACGAAAACCATTTGATAGTTCAAGGCCAAGGTCGGAGCAATCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATTGATGCTTTAACCAAGATGGTCGATCCCGAACTCAAAGGCCTTTATCCTGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTTCAGACGGAACCTGAGTTTAGACCTCCGATGTCAGAGGTGGTCGAGGCATTGGTCCGCTTGGTGCAACGAGCGAACATGAGTAAGAGAACTTATGGAAACGATAATGCAACATCTCCCAGAGGGGAGATGGGTGGAGAGGACACACCATAA 2148 44.74 MDWRWRELISLIILCILWSKPICIQGTTDPTDASALRVLYTSLNSPSQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLGSMTSVTNLDVSNNNLGGEIVYNLPPNLKRLNLGRNNFNKGIPYSISLMTSLQYLNISHNQLQDPLNDVYGQLTSLSILDLSFNAMSGNLPQSFSSLSGISSMYLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPEPLKNINLQKNGNSWNTGPAPPPPPGTPPATRRNRSRNSGGSPSNGGSSEGQKSGISGGAIAGIIISVLVVGAVVAFFLVRRRSKRSSTDIEKLDNQPLQPLKMTAAQETKSEDSSSTFYPTSFDTSAAINLKPPPIDRHKSFDEDDFSKRAPVKKASAAAPINVKSYSIADLQMATGSFNVDNLLGEGSVGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCLEHGQHLLVYEFHRNGSLYDFLHLSLSDEYNKPLIWNSRVKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAELSPHLSDSGLESFIPNADQALDGSGSSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRPRSEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28077696 28083156 + PI0005763.2 Cmetu01g1056 346330

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1056 715 MobiDBLite consensus disorder prediction 695 715 - -
Cmetu01g1056 715 CDD STKc_IRAK 415 686 - -
Cmetu01g1056 715 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cmetu01g1056 715 Pfam Leucine Rich repeat 142 156 IPR001611 GO:0005515
Cmetu01g1056 715 Pfam Leucine Rich repeat 96 114 IPR001611 GO:0005515
Cmetu01g1056 715 Gene3D Phosphorylase Kinase; domain 1 373 486 - -
Cmetu01g1056 715 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 487 697 - -
Cmetu01g1056 715 MobiDBLite consensus disorder prediction 330 348 - -
Cmetu01g1056 715 SUPERFAMILY Protein kinase-like (PK-like) 392 683 IPR011009 -
Cmetu01g1056 715 MobiDBLite consensus disorder prediction 238 283 - -
Cmetu01g1056 715 ProSiteProfiles Protein kinase domain profile. 409 686 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu01g1056 715 MobiDBLite consensus disorder prediction 260 283 - -
Cmetu01g1056 715 Pfam Protein tyrosine and serine/threonine kinase 411 683 IPR001245 GO:0004672|GO:0006468
Cmetu01g1056 715 Gene3D Transferase(Phosphotransferase) domain 1 488 705 - -
Cmetu01g1056 715 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 255 - -
Cmetu01g1056 715 SUPERFAMILY L domain-like 28 234 - -
Cmetu01g1056 715 MobiDBLite consensus disorder prediction 316 348 - -
Cmetu01g1056 715 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 687 IPR046959 -
Cmetu01g1056 715 Gene3D Ribonuclease Inhibitor 28 252 IPR032675 -
Cmetu01g1056 715 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 373 486 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1056 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1056 Cmetu-Chr1:28077696 Cmetu03g1756 Cmetu-Chr3:15376609 1.60E-142 dispersed
Cmetu01g1056 Cmetu-Chr1:28077696 Cmetu04g3017 Cmetu-Chr4:14760582 5.30E-215 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g1679 . 53 772 Strubbelig Receptor Gene Family AT4G03390 60.4 8.3e-190 661.0
Cmetu04g2436 . 17 731 Strubbelig Receptor Gene Family AT4G03390 53.4 7.4e-154 541.6
Cmetu01g1056 . 378 689 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-90 330.9
Cmetu04g0236 . 3 715 Strubbelig Receptor Gene Family AT5G06820 50.1 3.3e-188 655.6
Cmetu03g1756 . 22 697 Strubbelig Receptor Gene Family AT1G78980 59.3 1.7e-189 659.8
Cmetu04g3017 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.8 1.3e-154 543.9
Cmetu01g1056 . 24 692 Strubbelig Receptor Gene Family AT1G78980 51.3 2.6e-126 449.9
Cmetu03g1756 . 20 675 Strubbelig Receptor Gene Family AT3G13065 51.9 3.7e-141 499.2
Cmetu01g1056 . 28 687 Strubbelig Receptor Gene Family AT3G13065 50.4 4.0e-103 372.9
Cmetu12g0052 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.4e-84 311.2
Cmetu04g0236 . 3 715 Strubbelig Receptor Gene Family AT5G06820 50.1 3.3e-188 655.6
Cmetu01g1679 . 53 772 Strubbelig Receptor Gene Family AT4G03390 60.4 8.3e-190 661.0
Cmetu04g2436 . 17 731 Strubbelig Receptor Gene Family AT4G03390 53.4 7.4e-154 541.6
Cmetu01g1056 . 378 689 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-90 330.9
Cmetu03g1756 . 20 675 Strubbelig Receptor Gene Family AT3G13065 51.9 3.7e-141 499.2
Cmetu01g1056 . 28 687 Strubbelig Receptor Gene Family AT3G13065 50.4 4.0e-103 372.9
Cmetu03g1756 . 22 697 Strubbelig Receptor Gene Family AT1G78980 59.3 1.7e-189 659.8
Cmetu04g3017 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.8 1.3e-154 543.9
Cmetu01g1056 . 24 692 Strubbelig Receptor Gene Family AT1G78980 51.3 2.6e-126 449.9
Cmetu04g3017 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.8 6.3e-216 747.7
Cmetu01g1056 . 1 714 Strubbelig Receptor Gene Family AT1G53730 61.2 9.4e-188 654.1
Cmetu03g1756 . 15 683 Strubbelig Receptor Gene Family AT1G53730 50.6 4.4e-153 538.9
Cmetu04g3017 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 2.5e-190 662.5
Cmetu01g1056 . 6 704 Strubbelig Receptor Gene Family AT3G14350 56.4 4.5e-171 598.6
Cmetu12g0052 . 138 711 Strubbelig Receptor Gene Family AT4G22130 61.9 1.0e-181 633.6
Cmetu04g3017 . 404 726 Strubbelig Receptor Gene Family AT4G22130 64.0 1.1e-119 427.6
Cmetu01g1056 . 391 706 Strubbelig Receptor Gene Family AT4G22130 64.8 3.4e-116 416.0
Cmetu01g1679 . 486 764 Strubbelig Receptor Gene Family AT4G22130 59.8 1.6e-102 370.5
Cmetu03g1756 . 351 697 Strubbelig Receptor Gene Family AT4G22130 53.4 2.4e-98 356.7
Cmetu04g2436 . 464 731 Strubbelig Receptor Gene Family AT4G22130 60.4 6.4e-91 332.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70154 PF07714 PK_Tyr_Ser-Thr 7.60E-42 CL0016 Cmetu PK