Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1064 ATGCTGGAGTCAAGGATTTTAAACTCACTTGAAGTTTTGGATTTAAACTCTCCTGTAAGAAGCTGGAGAGAATACATTGGTAAAGAGGTTCCTACTAGATATACTTGTAGGCTTCTTGCAATCCCTTATGGGAGTGTTCCTGAAGATAAATCTAAGAAGGATAATCCAGAGGATCAACAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTAGAGGTCCAGGTTTTGTCAAATCCTAGTAAAGATCAGTTTTGTAGGACTCTCGAATCGTATAAACCAAACATTGTTTACTTACAAGGAGAACAACTCGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGGTGTTGATTTGTCCACTGTAGAAGCGATAAGTGGGCTCTTTAGTTATCCATTGCCCACCACTGTATATTTGGATATAGCAAAGGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATATCATATACTGGAGAAGCACATTTACTTGTTATGCAGCATGTCATTTCCGCAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGACGCATTTCAACTTGCACACGCTTCATTTAGGATGTATTGCTTTGGAAACAACTTTGTTCTTCCTAGCAGTAGTCATAAAGAAGTTAGTGAAGATCTGGGTCCACACCTTCTAGGGGAACGCTTGAAAATAAATGTCGAACCCCTAGAGAAAGAGGTAGCTGATGATGAAGAAAGTTCATCAGAAGGAATCTCCGTGAACATTCTTGATAATGATGTTGAAATGAGATTTCTTGTATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGAAGCTCTGGAGGATGGTCTTAACGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATTTATCTACATGCACTTTTGCCCACATTTCACTGTTGGTATCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGACAGAAGCGAACTAGTGCAGACACTAATCGATGGTGAAGGAAGCAAACACTTATCTCAACCACGTAAATCTACTTCAATTGCTTGTGGGTCAACGGTTTTTGAAGTTAGCTTGAAGGTCCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGACTGGGCATTGCCAGCATCCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAGCGCCTCCTTTTCTTCTGTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTTAACTGATAGCACACTCCCAAGCTGGTTGAAGCCACCTGCTCCTAGAAAGAGATCGAAATATATGAAAGATACAAGCCTTGGATCAAGGAATGGTTTTAGCACTCCCATGTTTCCACTTCCAAGAAGGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATCACTTTTCATGGAATATCTGAGACGGGCGGGCACAATGGAAGCCTCCTTAAAGCTAGTGTTCCTTCTAGTAATCCCACAAAGCATGTGACTGTAGGTTCAGCTTCAGTTTTCCAACAAAAAATATTTCCAAGTGCGTCTCAATATAAACAAATCATTCCCATGAATCCACTACCTTTGAAGAAGCACGGTTGTGGCAGAAGTCATATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGCTGCAGTTTTTAGCTCTTCGAGGTCACAGTCGACTTATTCCTCCAGGTGGGCTTGCTGAGTTTCCAGATGCTATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTCCGTGTTGGAAATGGCATTAATTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTAGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTATGCCACAGTTTTAGTGCAGCAGGGGACTGGGTGAACTGTGGCATTTGTGGAGAGTGGGCTCACTTCGGTTGCGATAGAAGGCAGGGTCTCGGTGCATTTAAGGATTATGCAAAAACTGATGGCTTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTTGCAAATGGTTTATCTCCAGGCTTCTCCTCAAGACCAATATGA 2346 41.9 MLESRILNSLEVLDLNSPVRSWREYIGKEVPTRYTCRLLAIPYGSVPEDKSKKDNPEDQQRYPFPQLNSSGRLEVQVLSNPSKDQFCRTLESYKPNIVYLQGEQLENDEVGSLVWGGVDLSTVEAISGLFSYPLPTTVYLDIAKGDEVADALHSKGIPYIIYWRSTFTCYAACHFRNAFLSVLQSSSAHTWDAFQLAHASFRMYCFGNNFVLPSSSHKEVSEDLGPHLLGERLKINVEPLEKEVADDEESSSEGISVNILDNDVEMRFLVCGEPGSLDAYVLEALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDLSTCTFAHISLLVSGSAQACFDDQLFENYIKNEIIDRSELVQTLIDGEGSKHLSQPRKSTSIACGSTVFEVSLKVPSWASQILRQLAPDVSYRSLVGLGIASIQGLSVASFEKDDAERLLFFCSRKEKDLFLSNLTDSTLPSWLKPPAPRKRSKYMKDTSLGSRNGFSTPMFPLPRRRGMKIAAMRPIPHVNRHKMITFHGISETGGHNGSLLKASVPSSNPTKHVTVGSASVFQQKIFPSASQYKQIIPMNPLPLKKHGCGRSHIQACFEEEFLKDLLQFLALRGHSRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSFSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVANGLSPGFSSRPI 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28204608 28209495 + PI0021027.1 Cmetu01g1064 346338

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1064 781 CDD ARID 599 696 - -
Cmetu01g1064 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 700 767 IPR013083 -
Cmetu01g1064 781 Pfam ARID/BRIGHT DNA binding domain 600 696 IPR001606 GO:0003677
Cmetu01g1064 781 CDD PHD_ARID4_like 706 758 - -
Cmetu01g1064 781 SMART ARID_2 593 696 - -
Cmetu01g1064 781 MobiDBLite consensus disorder prediction 47 66 - -
Cmetu01g1064 781 ProSiteProfiles ARID domain profile. 596 700 IPR001606 GO:0003677
Cmetu01g1064 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 32 773 IPR042293 -
Cmetu01g1064 781 Gene3D - 592 699 IPR036431 GO:0003677
Cmetu01g1064 781 SUPERFAMILY ARID-like 599 710 IPR036431 GO:0003677
Cmetu01g1064 781 SMART bright_3 597 701 IPR001606 GO:0003677
Cmetu01g1064 781 SUPERFAMILY FYVE/PHD zinc finger 697 766 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1064 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1064 Cmetu-Chr1:28204608 Cmetu04g1213 Cmetu-Chr4:15011742 6.20E-294 dispersed
Cmetu01g0203 Cmetu-Chr1:28159804 Cmetu01g1064 Cmetu-Chr1:28204608 0.00E+00 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1114 . 19 384 ARID Transcription Factor Family AT1G04880 55.9 1.1e-104 377.5
Cmetu06g1465 . 208 477 ARID Transcription Factor Family AT1G20910 61.0 2.5e-89 326.2
Cmetu07g1207 . 16 310 ARID Transcription Factor Family AT1G76110 68.5 2.1e-113 406.0
Cmetu06g1465 . 187 507 ARID Transcription Factor Family AT1G76510 59.5 7.6e-108 387.9
Cmetu04g1213 . 1 770 ARID Transcription Factor Family AT3G43240 59.7 3.6e-267 917.9
Cmetu01g0203 . 2 771 ARID Transcription Factor Family AT3G43240 57.5 2.1e-259 892.1
Cmetu01g1064 . 32 771 ARID Transcription Factor Family AT3G43240 59.1 3.6e-259 891.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7277 PF01388 ARID 2.40E-15 CL0123 Cmetu TR