Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1175 ATGATGCCAGTGCATGCTCGTTTTATCGAGCATTGTTATGGAAAGCTGATATATACTTCATTTTACAGGGTTCCAAATCTCATAGGAGGGACTTTTGTTGATTCTCAATCCTCAGCATTTATAGATGCGACGCAAGAAGTTGTTTCTCAAGTTCCATTGACCACAAATGATGAATTTAAAGCTGCAGTGTCTGCAGCAAAGCAGGCTTTTCCTGCATGGCGTAATACTCCAGTTACAACTCGTCAACGAATTATGTTCAAGCTTCAAGAACTTATTAGGCGAGATATAGACAAACTTGCTCTAAATATTACCACAGAACAAGGAAAAACAATAAAGGATGCACATGGAGATGTATTCCGTGGGCTAGAGGTTGTGGAACATGCATGTGGAATGGCATCTCTGCAAATGGGGGAGTATGTCTCTAATGTGTCACATGGAATTGATACCTACAGCATCAGAGAGCCTCTTGGTGTTTGTGCTGGGATTTGTCCGTTCAATTTTCCAGCAATGATCCCCCTTTGGATGTTCCCAATTGCTGTTACATGTGGGAATACCTTTGTTTTGAAGCCTTCAGAAAAAGATCCAGGGGCTTCTATAATCCTTGCAGAGTTAGCAATGGAGGCTGGACTGCCTAATGGTGTCCTAAATGTGGTTCATGGTACCAATGATGTTGTTAATGCCATTTGTGATGATGAAGATATAAAAGCAATATCATTTGTCGGTTCAAATATTGCGGGCATGCATATATATTCAAGGGGATCAGCTAAAGGAAAACGTGTTCAGTCCAATATGGGTGCAAAAAATCATGCAATTGTCTTGCCCGATGCCAGCATTGATGCTACTTTGAATGCTTTGGTTGCTGCTGGTTTTGGTGCTGCTGGACAAAGATGCATGGCACTTAGTACAGTTGTCTTTGTTGGAGACTCCAAGTTGTGGGAGGATAAACTTGTAGAACGTGCCAAAGCTCTGAAGGTAAACTCTGGAACAGAACCTGATGCAGATCTTGGTCCAGTAATTAGCAAGCAGGCAAAGGATAGGATTCACAGATTGGTTCAATCTGGCATCGATAGTGGAGCCAGACTACTGCTAGATGGGAGAAATATAGTGGTATCTTGTTACTTTTCATGTTGCAGATGGAAATTTATTGGCCCTACTATCTTAACAGATGTGACTCCGGACATGGAGTGCTACAAGGAAGAAATATTTGGCCCAGTTCTGCTTTGCATGCAGGCTGAAAGTTTAGAAGAGGCCATTAGCATCGTTAACGGAAATAGGTATGGCAATGGAGCTTCCATATTCACCACATCTGGGATAGCCGCGAGGAAGTTTCAAACGGATATTGAAGCTGGACAGGTTGGGATCAACGTTCCAATTCCAGTTCCCTTGCCTTTCTTCTCGTTCACCGGCTCCAAGGCATCTTTTGCTGGGGATCTCAATTTCTATGGGAAGGCAGGGGTGAACTTCTTCACACAGATAAAAACAGTGACACAACAATGGAAAGACTCAACTGGAGGAAGTGCAGTCAGTCTTGCAATGCCAACCTCTTTGAAGTCATAG 1557 42.9 MMPVHARFIEHCYGKLIYTSFYRVPNLIGGTFVDSQSSAFIDATQEVVSQVPLTTNDEFKAAVSAAKQAFPAWRNTPVTTRQRIMFKLQELIRRDIDKLALNITTEQGKTIKDAHGDVFRGLEVVEHACGMASLQMGEYVSNVSHGIDTYSIREPLGVCAGICPFNFPAMIPLWMFPIAVTCGNTFVLKPSEKDPGASIILAELAMEAGLPNGVLNVVHGTNDVVNAICDDEDIKAISFVGSNIAGMHIYSRGSAKGKRVQSNMGAKNHAIVLPDASIDATLNALVAAGFGAAGQRCMALSTVVFVGDSKLWEDKLVERAKALKVNSGTEPDADLGPVISKQAKDRIHRLVQSGIDSGARLLLDGRNIVVSCYFSCCRWKFIGPTILTDVTPDMECYKEEIFGPVLLCMQAESLEEAISIVNGNRYGNGASIFTTSGIAARKFQTDIEAGQVGINVPIPVPLPFFSFTGSKASFAGDLNFYGKAGVNFFTQIKTVTQQWKDSTGGSAVSLAMPTSLKS 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1445887 1453270 + PI0017954.1 Cmetu01g1175 346449

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1175 518 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 265 468 IPR016163 GO:0016620
Cmetu01g1175 518 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 290 301 IPR016160 GO:0016491
Cmetu01g1175 518 FunFam Methylmalonate-semialdehyde dehydrogenase [acylating] 28 271 - -
Cmetu01g1175 518 CDD ALDH_F6_MMSDH 24 499 IPR010061 GO:0004491
Cmetu01g1175 518 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 43 476 IPR016162 GO:0016491
Cmetu01g1175 518 Pfam Aldehyde dehydrogenase family 41 495 IPR015590 GO:0016491
Cmetu01g1175 518 FunFam Methylmalonate-semialdehyde dehydrogenase (Acylating) 265 468 - -
Cmetu01g1175 518 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 22 515 IPR010061 GO:0004491
Cmetu01g1175 518 NCBIfam CoA-acylating methylmalonate-semialdehyde dehydrogenase 26 499 IPR010061 GO:0004491
Cmetu01g1175 518 SUPERFAMILY ALDH-like 14 500 IPR016161 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1175 K00140 - - csv:101204924 916.761
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1175 Cmetu-Chr1:1445887 Cmetu08g0424 Cmetu-Chr8:20809568 1.60E-168 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g1987 . 7 454 Aldehyde Dehydrogenase Gene Family AT3G24503 71.5 5.0e-188 654.4
Cmetu05g1877 . 58 542 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 6.4e-159 557.8
Cmetu02g1050 . 46 551 Aldehyde Dehydrogenase Gene Family AT3G24503 53.3 4.3e-155 545.0
Cmetu02g1050 . 4 551 Aldehyde Dehydrogenase Gene Family AT3G48000 77.4 6.3e-253 870.2
Cmetu05g1877 . 1 542 Aldehyde Dehydrogenase Gene Family AT3G48000 75.1 6.7e-247 850.1
Cmetu02g1987 . 23 454 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 9.3e-140 494.2
Cmetu05g1877 . 1 386 Aldehyde Dehydrogenase Gene Family AT1G23800 75.8 5.6e-169 590.9
Cmetu02g1050 . 4 395 Aldehyde Dehydrogenase Gene Family AT1G23800 72.7 4.4e-166 581.3
Cmetu02g1987 . 23 351 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 2.9e-101 365.9
Cmetu07g0284 . 3 486 Aldehyde Dehydrogenase Gene Family AT4G34240 62.8 1.9e-180 629.4
Cmetu07g0245 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.0 1.6e-176 616.3
Cmetu07g0284 . 74 484 Aldehyde Dehydrogenase Gene Family AT1G44170 73.0 1.9e-180 629.0
Cmetu07g0245 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.3 5.4e-175 610.9
Cmetu05g0548 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 5.1e-117 418.3
Cmetu07g0297 . 1 462 Aldehyde Dehydrogenase Gene Family AT4G36250 58.5 3.1e-166 582.0
Cmetu05g0548 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 55.7 4.4e-157 551.6
Cmetu11g2423 . 37 540 Aldehyde Dehydrogenase Gene Family AT1G79440 77.0 4.9e-234 807.4
Cmetu01g1175 . 23 483 Aldehyde Dehydrogenase Gene Family AT2G14170 82.6 6.1e-225 777.3
Cmetu08g0424 . 218 643 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.3e-171 599.4
Cmetu02g0096 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 1.9e-251 865.1
Cmetu02g0096 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 80.9 3.1e-254 874.4
Cmetu05g0490 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 90.4 1.5e-269 925.2
Cmetu12g1329 . 21 548 Aldehyde Dehydrogenase Gene Family AT5G62530 77.1 2.6e-254 874.8
Cmetu11g1721 . 41 627 Aldehyde Dehydrogenase Gene Family AT3G66658 76.3 1.3e-275 945.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004517 1 1 3 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 40