Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1207 ATGGATTTTGACGAGTATGATTATTTGGAGAAAACAGTTGAAAATCCCGAGGGACAGAAAGTGAAGGAAACTGCCAATGGCGGTGATGGAGAAATGAAATCTGGAGATAAGCATCATAGTCGAAGTTCGAAGTATAAGAGTGATGGTAAAGATGATGGGGACATAGGTCAAAGCGTTCGAAATCGGATGATGAATCACGTGACCGAGATCGGCATAGAGATAGGACTTCTTCCCGGCATCGGTCTAGGTCCAGAGAGAGGGATCGTGATAGGCATCGAAGCAGTAAGGAAAATAGGGAAAAGAGGACAGAGAAGGGAATCAGGAAGAGAGAAGCAAGAACGGTCACGTCGAAGTAGAAGTCGTTCAGAAAGACATCGCAGTGATCGGGATGATGGCATAAGAGAGAGGAGCCGAGATAATGAACTCAGAGAAAGAGAAAAGGAGAGAGAGTCTAGAGAGCGAGGCAGAGATGGCAGGTATTTTTATAAACTTTTAACGTGTTCTGTGTTAATGCAATTAGGTTCTTTGCTACTGCATCAATTTCACTTGATGACGCTGTTAAGATATAAAGATAAAAAGGACGAAACAGCTGAACCAGAAGCTGATCCTGAAAGGGATCAGAGGACTGTGTTTGCCTATCAGTTTAAAGGCACTGAAAGAGATGTGTACGAGTTCTTCTCCAGGGCTGGTAAGGTTTGTATGCTCGTCAAATTACAAAGTGCAGTACTAGGCGCTATAGGTGAAAAACATCAGATAAAGAGGCGATCCAGGGTTCTTCATTCTATGGAGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATAGCACTTTCCGGCCAGCTCCTGCTTAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAAAACCAGGTTCAATCAACTTCTGCTGCTGGTGGACCAGGTGGAGCAATGGGCCCCTACTCTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCACCCCAACATAACTGAAGATAACCTTCGTCAGGTTTTTGGAGCTTTTGGCACTGTGGAACTGGTTCAGATGCCCCTTGATGAATCTGGCCATTGCAAGGGTTTTGGTTTTATTCAGTTCACACGTCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAACAATAAAGGTGTCTACAGTCACAGATCAGCCTGGTTTGCAAGATGTTGGAGCAAGTACAGGAGACCTTGATGAGGAAGACGGCGGTGGCTTGTCCTTAAACGCTAGTTCTCGAGCATCCCTGATGCAGAAGCTGGACCGTACTGGCGCCGCATCTAGCATTGCTGGTTCTTTAGGTACACATGTTGTAAATAACACAGGTGCGACTGTGCCGGTGGCACCAATCCTTGGAGGTGCAACTATCTCATCCCTTGGTGTTGGTACTTCTTTGGCTGCCTTTCCTGCTTTTCCTGCACTTGGTGCAGGCGTTCAGGTTCCCCCCGTCACTGCCAATTTACTTGGTGTTGGTACTCCAAGTGAATGTTTACTATTGAAGAATATGTTTGATCCTACAGCTGAGTCAGAACCAACTTTCGATCTGGATATCCGAGATGACGTTGAAGAGGAATGCTCTAGGTTCGGAAAATTGAAACATATATATGTTGACAAGAATAGCGCCGGTTTTGTATATTTGAGGTTTGAAAAATCGGAGTCTGCACTTGAAGCCCAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATTGGTGCAACTTTCATGGACATTCCAATCTATGAAGCTAAATTTCCAGACAGCAGATAA 1815 45.01 MDFDEYDYLEKTVENPEGQKVKETANGGDGEMKSGDKHHSRSSKYKSDGKDDGDIGQSVRNRMMNHVTEIGIEIGLLPGIGLGPERGIVIGIEAVRKIGKRGQRRESGREKQERSRRSRSRSERHRSDRDDGIRERSRDNELREREKERESRERGRDGRYFYKLLTCSVLMQLGSLLLHQFHLMTLLRYKDKKDETAEPEADPERDQRTVFAYQFKGTERDVYEFFSRAGKVCMLVKLQSAVLGAIGEKHQIKRRSRVLHSMEYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGAMGPYSGGARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPLDESGHCKGFGFIQFTRLEDARNALSLNGQLEIAGRTIKVSTVTDQPGLQDVGASTGDLDEEDGGGLSLNASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGATVPVAPILGGATISSLGVGTSLAAFPAFPALGAGVQVPPVTANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSAGFVYLRFEKSESALEAQRALNGRWFAGKMIGATFMDIPIYEAKFPDSR 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5139605 5148850 + PI0022518.1 Cmetu01g1207 346481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1207 604 FunFam CC1-like, splicing factor 317 425 - -
Cmetu01g1207 604 CDD RRM3_RBM39_like 509 592 - -
Cmetu01g1207 604 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 603 IPR006509 GO:0003723|GO:0005634|GO:0006397
Cmetu01g1207 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 399 IPR000504 GO:0003723
Cmetu01g1207 604 Gene3D - 506 604 IPR012677 -
Cmetu01g1207 604 Gene3D - 305 402 IPR012677 -
Cmetu01g1207 604 SUPERFAMILY RNA-binding domain, RBD 322 589 IPR035979 GO:0003676
Cmetu01g1207 604 MobiDBLite consensus disorder prediction 99 153 - -
Cmetu01g1207 604 Gene3D - 201 304 IPR012677 -
Cmetu01g1207 604 SMART rrm1_1 511 589 IPR000504 GO:0003723
Cmetu01g1207 604 SMART rrm1_1 323 395 IPR000504 GO:0003723
Cmetu01g1207 604 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 413 528 IPR029123 -
Cmetu01g1207 604 SMART rrm2_1 511 589 IPR003954 GO:0003676
Cmetu01g1207 604 SMART rrm2_1 323 395 IPR003954 GO:0003676
Cmetu01g1207 604 NCBIfam splicing factor, CC1-like family 103 602 IPR006509 GO:0003723|GO:0005634|GO:0006397
Cmetu01g1207 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 393 IPR000504 GO:0003723
Cmetu01g1207 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 534 585 IPR000504 GO:0003723
Cmetu01g1207 604 MobiDBLite consensus disorder prediction 1 57 - -
Cmetu01g1207 604 SUPERFAMILY RNA-binding domain, RBD 217 320 IPR035979 GO:0003676
Cmetu01g1207 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 510 593 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1207 K13091 - - csv:101209872 731.095
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1207 Cmetu-Chr1:5139605 Cmetu08g1875 Cmetu-Chr8:18718298 6.00E-103 dispersed
Cmetu01g1207 Cmetu-Chr1:5139605 Cmetu01g1957 Cmetu-Chr1:28392571 2.80E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65