Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1228 ATGGAAATAACTCTAAACAATGGCTTCCCAATGCCAATGATGGGACTTGGAGTTTGGCGTATGGAGAAGGAAGAAATCAAAGATCTCATTATCAATGCTATTAAATTGGTTATCGCCATTTTGACTGCGCCGGTAGCACTCTTTTTCACTCTTTTATTATCTGTCGTTATTAAATATTATTTTGGTCTTTCTGACTATAAAAGTGAGGCTGAAATAGGTGAGGCACTAGCAGAAGCTTTAGAGAGCGGACTTGTGAAAAGGGAAGAACTTTTCATTACCTCAAAGCTATGGAACTCAGACCATGGACATGTTCTTGAGGCTTGCAAGGACAGCTTAAAGAAACTTCAACTACAATATTTGGATTTGTATCTAGTGCACTTCCCAATAGCCACAAAGCATACAGGGGTTGGCAATACCAGTAGTGCGTTGGGTAAAGATGGGATGTTGGACATTGATACAACCATATCTTTAGAAACCACTTGGCATGCCATGGAAGATCTGGTTTATGCAGGTTTAGTTCGCAGCATCGGGATCAGCAACTACGACATATTTGTAACAAGAGATTGTTTGGCATACTCAAAAGTGAAACCTGCAGTGAACCAAATTGAAACACATCCATATTTTCAAAGAGAATCTCTTGTCAAATTTTGTCAAAAGCATGGAATATGTGTCACAGCTCATACTCCTTTAGGGGGTGCTGCAGCAAATCCTGAATTTTTTGGTGCAACTTATAATTGTCTCGAAGATCCTCTTCTTCAAGAACTCGCGGAGAAATATGAGAGGAGCCCTGCTCAAATTGCCCTAAGATGGGGAATTCAAAGGAACACTGCGGTTATACCAAAGACTTCAAAATTGAAGAGATTGGAAGAAAATTTGCAAGTTTTTGATTTTGAGCTTGAAGAGGAAGATATGGATCTCATAAAAAATATTGACAAGAAATATAGAACCAATCTCATATCAACATTGGCTTGGGGCATGGATATATATGCTTAA 993 38.77 MEITLNNGFPMPMMGLGVWRMEKEEIKDLIINAIKLVIAILTAPVALFFTLLLSVVIKYYFGLSDYKSEAEIGEALAEALESGLVKREELFITSKLWNSDHGHVLEACKDSLKKLQLQYLDLYLVHFPIATKHTGVGNTSSALGKDGMLDIDTTISLETTWHAMEDLVYAGLVRSIGISNYDIFVTRDCLAYSKVKPAVNQIETHPYFQRESLVKFCQKHGICVTAHTPLGGAAANPEFFGATYNCLEDPLLQELAEKYERSPAQIALRWGIQRNTAVIPKTSKLKRLEENLQVFDFELEEEDMDLIKNIDKKYRTNLISTLAWGMDIYA 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5676369 5681285 - PI0026308.1 Cmetu01g1228 346502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1228 330 FunFam NADP-dependent D-sorbitol-6-phosphate dehydrogenase 51 327 - -
Cmetu01g1228 330 ProSitePatterns Aldo/keto reductase family putative active site signature. 279 294 IPR018170 GO:0016491
Cmetu01g1228 330 PANTHER 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE 3 317 IPR020471 GO:0016491
Cmetu01g1228 330 Gene3D - 1 326 IPR036812 -
Cmetu01g1228 330 PIRSF AKR 1 40 IPR020471 GO:0016491
Cmetu01g1228 330 PIRSF AKR 57 329 IPR020471 GO:0016491
Cmetu01g1228 330 Pfam Aldo/keto reductase family 60 311 IPR023210 -
Cmetu01g1228 330 ProSitePatterns Aldo/keto reductase family signature 2. 164 181 IPR018170 GO:0016491
Cmetu01g1228 330 PRINTS Aldo-keto reductase signature 110 128 IPR020471 GO:0016491
Cmetu01g1228 330 PRINTS Aldo-keto reductase signature 246 270 IPR020471 GO:0016491
Cmetu01g1228 330 PRINTS Aldo-keto reductase signature 164 181 IPR020471 GO:0016491
Cmetu01g1228 330 PRINTS Aldo-keto reductase signature 198 227 IPR020471 GO:0016491
Cmetu01g1228 330 PRINTS Aldo-keto reductase signature 52 76 IPR020471 GO:0016491
Cmetu01g1228 330 Coils Coil 285 305 - -
Cmetu01g1228 330 SUPERFAMILY NAD(P)-linked oxidoreductase 3 319 IPR036812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1228 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1228 Cmetu-Chr1:5676369 Cmetu08g1925 Cmetu-Chr8:2048061 1.40E-149 dispersed
Cmetu01g0967 Cmetu-Chr1:5668397 Cmetu01g1228 Cmetu-Chr1:5676369 5.40E-140 tandem
Cmetu01g1228 Cmetu-Chr1:5676369 Cmetu01g0156 Cmetu-Chr1:5684779 9.10E-138 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g53 . . . . . . . . Cmo19g00708 . . . . . Sed05g2284 . Cpe15g00567 Bhi05g01781 Tan02g0747 Cmetu01g1228 . Hepe02g0463 . . Cla02g00479 Cam02g0487 Cec02g0488 Cco02g0493 Clacu02g0490 Cmu02g0485 Cre02g0819 Cone12ag1195 Cone8ag1243 . . . Csa07g00045 . Cme01g01322 . . . . . . . . . . . . Cma19g00699 . Car19g00541 . . . . . . . . . . . . . . . . Lsi11g01144 . Chy01g00736 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002236 1 2 1 1 0 3 1 2 2 2 3 4 1 2 4 1 3 3 1 2 4 2 2 2 3 3 1 3 1 1 61