Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1234 ATGGCACAGTTACCACCTAAGATCCCCAATATGACTTCTAATTGGCCTGAATTTTCCCGTCAGAAAATCCCTTCCATGGAAACTTTTGCACCTACCACCACTACACCACCGGTTACTCACCAGAATCCATCTTGGGTCGATGAATTTCTTGATTTTTCTTCCGCTAGACGTGGATCGCATCGTCGGTCTGTTAGTGATTCCATCACATTCCTTGAAATGCCAATGCTGGAGGATGATTGCCGTGCCTCCGCCGCTCCCCCACCGCCGTCCACTGCAGCCGGTGACCGGAATGAATTTGATAGATTTGATGACGAGCAATTCCTGTCCATGTTCAATGACGAAATCTCCACTGCTGTTGCACCAACTTTGTCGTCGTCGAACCCTTCCACGCCGTCGGATCATAACAGTATTAACGATGAGAAAGATGCGCAAAACGATGGGAAGGTAAATCAGAATAAAAATGAATCCGACGAAGTACAGAGCCCACAGCAATCGGAAAATCAAACGCAATCCAATTCAACGGCGACGGCGGGTTCCACTGATCGGATAACAGACCCAAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCACAAAGATCACGAGTGAGGAAGCTTCAATACATATCAGAACTTGAACGAAGCGTTACATCATTACAGGCTGAAGTATCGGTGTTGTCGCCGCGAGTGGCGTTTTTGGACCATCAGAGATTGCTTCTTAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTAAAGATGCTCATCAAGAGGCATTAA 807 46.96 MAQLPPKIPNMTSNWPEFSRQKIPSMETFAPTTTTPPVTHQNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEDDCRASAAPPPPSTAAGDRNEFDRFDDEQFLSMFNDEISTAVAPTLSSSNPSTPSDHNSINDEKDAQNDGKVNQNKNESDEVQSPQQSENQTQSNSTATAGSTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKILKMLIKRH 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3535327 3539759 - PI0005837.1 Cmetu01g1234 346508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1234 268 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 190 205 IPR004827 GO:0003700|GO:0006355
Cmetu01g1234 268 PANTHER BASIC LEUCINE ZIPPER 34 1 262 - -
Cmetu01g1234 268 MobiDBLite consensus disorder prediction 120 189 - -
Cmetu01g1234 268 Pfam bZIP transcription factor 187 230 IPR004827 GO:0003700|GO:0006355
Cmetu01g1234 268 MobiDBLite consensus disorder prediction 154 181 - -
Cmetu01g1234 268 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 185 237 IPR004827 GO:0003700|GO:0006355
Cmetu01g1234 268 SUPERFAMILY Leucine zipper domain 187 241 IPR046347 GO:0003700|GO:0006355
Cmetu01g1234 268 MobiDBLite consensus disorder prediction 120 134 - -
Cmetu01g1234 268 SMART brlzneu 183 247 IPR004827 GO:0003700|GO:0006355
Cmetu01g1234 268 MobiDBLite consensus disorder prediction 135 153 - -
Cmetu01g1234 268 Gene3D - 186 259 - -
Cmetu01g1234 268 FunFam Basic leucine zipper 61 186 259 - -
Cmetu01g1234 268 MobiDBLite consensus disorder prediction 80 99 - -
Cmetu01g1234 268 CDD bZIP_plant_RF2 188 238 IPR044759 GO:0003700|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1234 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1234 Cmetu-Chr1:3535327 Cmetu01g1904 Cmetu-Chr1:18333286 1.70E-12 dispersed
Cmetu06g0931 Cmetu-Chr6:9051753 Cmetu01g1234 Cmetu-Chr1:3535327 3.00E-15 transposed
Cmetu07g1383 Cmetu-Chr7:21745399 Cmetu01g1234 Cmetu-Chr1:3535327 1.50E-44 transposed
Cmetu10g0860 Cmetu-Chr10:20951366 Cmetu01g1234 Cmetu-Chr1:3535327 1.20E-08 transposed
Cmetu10g1286 Cmetu-Chr10:17544080 Cmetu01g1234 Cmetu-Chr1:3535327 8.40E-18 transposed
Cmetu11g0920 Cmetu-Chr11:7359072 Cmetu01g1234 Cmetu-Chr1:3535327 9.20E-12 transposed
Cmetu01g1234 Cmetu-Chr1:3535327 Cmetu11g1602 Cmetu-Chr11:21619674 5.50E-40 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g1692 . 88 323 bZIP Transcription Factor Family AT5G24800 51.4 6.3e-47 184.9
Cmetu06g1825 . 1 343 bZIP Transcription Factor Family AT2G35530 67.6 2.7e-107 386.0
Cmetu04g2968 . 1 344 bZIP Transcription Factor Family AT2G35530 62.5 2.6e-102 369.4
Cmetu10g0991 . 16 344 bZIP Transcription Factor Family AT2G40620 57.1 1.2e-85 313.9
Cmetu03g0084 . 170 321 bZIP Transcription Factor Family AT2G40620 65.1 4.7e-42 169.1
Cmetu01g1050 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 7.0e-38 155.2
Cmetu01g0373 . 382 518 bZIP Transcription Factor Family AT2G40620 67.2 7.0e-38 155.2
Cmetu11g0608 . 1 233 bZIP Transcription Factor Family AT4G35040 62.6 3.7e-65 245.4
Cmetu01g2682 . 1 266 bZIP Transcription Factor Family AT4G35040 58.9 2.2e-62 236.1
Cmetu10g0198 . 1 331 bZIP Transcription Factor Family AT5G06950 80.7 1.4e-141 499.6
Cmetu03g1598 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.3e-139 493.0
Cmetu04g2941 . 137 468 bZIP Transcription Factor Family AT5G06950 72.9 1.2e-121 433.3
Cmetu04g1763 . 229 523 bZIP Transcription Factor Family AT5G06950 60.6 4.5e-92 335.1
Cmetu12g1185 . 176 459 bZIP Transcription Factor Family AT5G06950 57.5 1.1e-85 313.9
Cmetu11g0605 . 188 466 bZIP Transcription Factor Family AT5G06950 56.5 4.9e-83 305.1
Cmetu07g1014 . 78 360 bZIP Transcription Factor Family AT5G06950 54.3 4.9e-75 278.5
Cmetu03g1361 . 78 370 bZIP Transcription Factor Family AT5G06950 52.5 7.9e-73 271.2
Cmetu03g2097 . 134 317 bZIP Transcription Factor Family AT5G06950 62.6 2.2e-51 199.9
Cmetu12g1185 . 174 488 bZIP Transcription Factor Family AT1G08320 73.3 1.2e-127 453.4
Cmetu11g0605 . 186 494 bZIP Transcription Factor Family AT1G08320 66.8 2.3e-110 396.0
Cmetu10g0198 . 44 331 bZIP Transcription Factor Family AT1G08320 63.9 3.1e-99 359.0
Cmetu03g1598 . 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.5e-98 355.1
Cmetu04g1763 . 206 523 bZIP Transcription Factor Family AT1G08320 58.8 1.2e-95 347.1
Cmetu04g2941 . 178 468 bZIP Transcription Factor Family AT1G08320 60.1 4.8e-92 335.1
Cmetu03g2097 . 172 332 bZIP Transcription Factor Family AT1G08320 52.8 6.8e-38 155.2
Cmetu11g0608 . 1 261 bZIP Transcription Factor Family AT2G16770 59.2 1.3e-64 243.4
Cmetu01g2682 . 1 266 bZIP Transcription Factor Family AT2G16770 57.7 7.3e-63 237.7
Cmetu03g1598 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 1.9e-129 459.1
Cmetu10g0198 . 32 331 bZIP Transcription Factor Family AT5G06960 81.7 4.3e-129 458.0
Cmetu04g2941 . 158 468 bZIP Transcription Factor Family AT5G06960 70.2 2.9e-109 392.1
Cmetu04g1763 . 215 523 bZIP Transcription Factor Family AT5G06960 59.9 2.3e-90 329.3
Cmetu12g1185 . 176 459 bZIP Transcription Factor Family AT5G06960 56.5 1.0e-82 303.9
Cmetu11g0605 . 188 466 bZIP Transcription Factor Family AT5G06960 55.5 9.7e-81 297.4
Cmetu07g1014 . 53 360 bZIP Transcription Factor Family AT5G06960 51.6 4.4e-73 271.9
Cmetu03g1361 . 69 370 bZIP Transcription Factor Family AT5G06960 51.0 1.4e-71 266.9
Cmetu03g2097 . 160 317 bZIP Transcription Factor Family AT5G06960 60.8 1.5e-44 177.2
Cmetu01g1050 . 1 517 bZIP Transcription Factor Family AT4G38900 61.1 1.3e-133 473.8
Cmetu01g0373 . 1 565 bZIP Transcription Factor Family AT4G38900 56.9 8.6e-133 471.1
Cmetu03g0084 . 115 306 bZIP Transcription Factor Family AT4G38900 55.3 4.2e-39 159.8
Cmetu01g1904 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 2.3e-37 154.1
Cmetu10g0991 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 8.9e-37 152.1
Cmetu01g0373 . 2 534 bZIP Transcription Factor Family AT2G21230 50.8 3.7e-101 365.9
Cmetu01g1050 . 65 545 bZIP Transcription Factor Family AT2G21230 54.0 1.2e-99 360.9
Cmetu01g1904 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 4.5e-38 156.4
Cmetu01g1234 . 1 262 bZIP Transcription Factor Family AT2G42380 59.4 3.9e-70 261.9
Cmetu03g0833 . 6 353 bZIP Transcription Factor Family AT1G45249 54.3 1.9e-84 310.1
Cmetu10g0198 . 1 331 bZIP Transcription Factor Family AT3G12250 80.4 6.8e-141 497.3
Cmetu03g1598 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.3e-139 493.0
Cmetu04g2941 . 137 468 bZIP Transcription Factor Family AT3G12250 73.4 1.6e-121 433.0
Cmetu04g1763 . 229 523 bZIP Transcription Factor Family AT3G12250 59.9 4.9e-91 331.6
Cmetu12g1185 . 176 459 bZIP Transcription Factor Family AT3G12250 57.5 1.5e-84 310.1
Cmetu11g0605 . 188 466 bZIP Transcription Factor Family AT3G12250 56.8 1.1e-82 303.9
Cmetu07g1014 . 47 360 bZIP Transcription Factor Family AT3G12250 51.8 2.9e-75 279.3
Cmetu03g1361 . 69 370 bZIP Transcription Factor Family AT3G12250 51.0 1.8e-72 270.0
Cmetu03g2097 . 134 317 bZIP Transcription Factor Family AT3G12250 63.0 1.5e-52 203.8
Cmetu10g0198 . 1 331 bZIP Transcription Factor Family AT1G68640 68.6 1.2e-119 427.2
Cmetu03g1598 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 1.3e-115 413.7
Cmetu04g2941 . 135 468 bZIP Transcription Factor Family AT1G68640 65.9 1.5e-111 400.2
Cmetu04g1763 . 217 523 bZIP Transcription Factor Family AT1G68640 55.3 4.5e-87 318.9
Cmetu12g1185 . 181 459 bZIP Transcription Factor Family AT1G68640 57.4 6.5e-86 315.1
Cmetu11g0605 . 159 466 bZIP Transcription Factor Family AT1G68640 52.5 2.2e-78 290.0
Cmetu03g2097 . 13 317 bZIP Transcription Factor Family AT1G68640 50.2 4.7e-68 255.8
Cmetu03g0084 . 31 346 bZIP Transcription Factor Family AT1G43700 53.6 5.7e-66 248.4
Cmetu01g1904 . 12 293 bZIP Transcription Factor Family AT1G43700 52.8 1.1e-64 244.2
Cmetu06g1979 . 43 358 bZIP Transcription Factor Family AT2G31370 67.0 3.0e-103 372.5
Cmetu06g0081 . 75 369 bZIP Transcription Factor Family AT2G31370 62.1 4.7e-88 322.0
Cmetu10g0991 . 25 248 bZIP Transcription Factor Family AT2G31370 51.8 3.6e-48 189.5
Cmetu01g1234 . 1 262 bZIP Transcription Factor Family AT3G58120 53.9 1.6e-66 250.0
Cmetu03g1833 . 17 321 bZIP Transcription Factor Family AT3G56850 56.5 6.7e-71 264.6
Cmetu06g1825 . 1 345 bZIP Transcription Factor Family AT1G32150 62.7 7.6e-99 357.8
Cmetu04g2968 . 1 345 bZIP Transcription Factor Family AT1G32150 60.4 1.2e-96 350.5
Cmetu06g1979 . 1 357 bZIP Transcription Factor Family AT1G06070 68.0 6.1e-118 421.4
Cmetu06g0081 . 56 363 bZIP Transcription Factor Family AT1G06070 62.9 2.7e-94 342.8
Cmetu01g0373 . 382 543 bZIP Transcription Factor Family AT1G06070 61.0 2.1e-38 157.1
Cmetu01g1050 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.1e-37 154.8
Cmetu03g0833 . 6 353 bZIP Transcription Factor Family AT1G45249 54.3 1.9e-84 310.1
Cmetu06g1825 . 1 343 bZIP Transcription Factor Family AT2G35530 67.6 2.7e-107 386.0
Cmetu04g2968 . 1 344 bZIP Transcription Factor Family AT2G35530 62.5 2.6e-102 369.4
Cmetu10g0991 . 16 344 bZIP Transcription Factor Family AT2G40620 57.1 1.2e-85 313.9
Cmetu03g0084 . 170 321 bZIP Transcription Factor Family AT2G40620 65.1 4.7e-42 169.1
Cmetu01g1050 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 7.0e-38 155.2
Cmetu01g0373 . 382 518 bZIP Transcription Factor Family AT2G40620 67.2 7.0e-38 155.2
Cmetu11g0608 . 1 233 bZIP Transcription Factor Family AT4G35040 62.6 3.7e-65 245.4
Cmetu01g2682 . 1 266 bZIP Transcription Factor Family AT4G35040 58.9 2.2e-62 236.1
Cmetu10g0198 . 1 331 bZIP Transcription Factor Family AT5G06950 80.7 1.4e-141 499.6
Cmetu03g1598 . 6 333 bZIP Transcription Factor Family AT5G06950 80.7 1.3e-139 493.0
Cmetu04g2941 . 137 468 bZIP Transcription Factor Family AT5G06950 72.9 1.2e-121 433.3
Cmetu04g1763 . 229 523 bZIP Transcription Factor Family AT5G06950 60.6 4.5e-92 335.1
Cmetu12g1185 . 176 459 bZIP Transcription Factor Family AT5G06950 57.5 1.1e-85 313.9
Cmetu11g0605 . 188 466 bZIP Transcription Factor Family AT5G06950 56.5 4.9e-83 305.1
Cmetu07g1014 . 78 360 bZIP Transcription Factor Family AT5G06950 54.3 4.9e-75 278.5
Cmetu03g1361 . 78 370 bZIP Transcription Factor Family AT5G06950 52.5 7.9e-73 271.2
Cmetu03g2097 . 134 317 bZIP Transcription Factor Family AT5G06950 62.6 2.2e-51 199.9
Cmetu12g1185 . 174 488 bZIP Transcription Factor Family AT1G08320 73.3 1.2e-127 453.4
Cmetu11g0605 . 186 494 bZIP Transcription Factor Family AT1G08320 66.8 2.3e-110 396.0
Cmetu10g0198 . 44 331 bZIP Transcription Factor Family AT1G08320 63.9 3.1e-99 359.0
Cmetu03g1598 . 46 333 bZIP Transcription Factor Family AT1G08320 63.2 4.5e-98 355.1
Cmetu04g1763 . 206 523 bZIP Transcription Factor Family AT1G08320 58.8 1.2e-95 347.1
Cmetu04g2941 . 178 468 bZIP Transcription Factor Family AT1G08320 60.1 4.8e-92 335.1
Cmetu03g2097 . 172 332 bZIP Transcription Factor Family AT1G08320 52.8 6.8e-38 155.2
Cmetu11g0608 . 1 261 bZIP Transcription Factor Family AT2G16770 59.2 1.3e-64 243.4
Cmetu01g2682 . 1 266 bZIP Transcription Factor Family AT2G16770 57.7 7.3e-63 237.7
Cmetu03g1598 . 25 333 bZIP Transcription Factor Family AT5G06960 80.9 1.9e-129 459.1
Cmetu10g0198 . 32 331 bZIP Transcription Factor Family AT5G06960 81.7 4.3e-129 458.0
Cmetu04g2941 . 158 468 bZIP Transcription Factor Family AT5G06960 70.2 2.9e-109 392.1
Cmetu04g1763 . 215 523 bZIP Transcription Factor Family AT5G06960 59.9 2.3e-90 329.3
Cmetu12g1185 . 176 459 bZIP Transcription Factor Family AT5G06960 56.5 1.0e-82 303.9
Cmetu11g0605 . 188 466 bZIP Transcription Factor Family AT5G06960 55.5 9.7e-81 297.4
Cmetu07g1014 . 53 360 bZIP Transcription Factor Family AT5G06960 51.6 4.4e-73 271.9
Cmetu03g1361 . 69 370 bZIP Transcription Factor Family AT5G06960 51.0 1.4e-71 266.9
Cmetu03g2097 . 160 317 bZIP Transcription Factor Family AT5G06960 60.8 1.5e-44 177.2
Cmetu01g1050 . 1 517 bZIP Transcription Factor Family AT4G38900 61.1 1.3e-133 473.8
Cmetu01g0373 . 1 565 bZIP Transcription Factor Family AT4G38900 56.9 8.6e-133 471.1
Cmetu03g0084 . 115 306 bZIP Transcription Factor Family AT4G38900 55.3 4.2e-39 159.8
Cmetu01g1904 . 101 282 bZIP Transcription Factor Family AT4G38900 55.4 2.3e-37 154.1
Cmetu10g0991 . 123 237 bZIP Transcription Factor Family AT4G38900 76.5 8.9e-37 152.1
Cmetu01g0373 . 2 534 bZIP Transcription Factor Family AT2G21230 50.8 3.7e-101 365.9
Cmetu01g1050 . 65 545 bZIP Transcription Factor Family AT2G21230 54.0 1.2e-99 360.9
Cmetu01g1904 . 101 282 bZIP Transcription Factor Family AT2G21230 56.8 4.5e-38 156.4
Cmetu01g1234 . 1 262 bZIP Transcription Factor Family AT2G42380 59.4 3.9e-70 261.9
Cmetu10g0198 . 1 331 bZIP Transcription Factor Family AT3G12250 80.4 6.8e-141 497.3
Cmetu03g1598 . 6 333 bZIP Transcription Factor Family AT3G12250 80.8 1.3e-139 493.0
Cmetu04g2941 . 137 468 bZIP Transcription Factor Family AT3G12250 73.4 1.6e-121 433.0
Cmetu04g1763 . 229 523 bZIP Transcription Factor Family AT3G12250 59.9 4.9e-91 331.6
Cmetu12g1185 . 176 459 bZIP Transcription Factor Family AT3G12250 57.5 1.5e-84 310.1
Cmetu11g0605 . 188 466 bZIP Transcription Factor Family AT3G12250 56.8 1.1e-82 303.9
Cmetu07g1014 . 47 360 bZIP Transcription Factor Family AT3G12250 51.8 2.9e-75 279.3
Cmetu03g1361 . 69 370 bZIP Transcription Factor Family AT3G12250 51.0 1.8e-72 270.0
Cmetu03g2097 . 134 317 bZIP Transcription Factor Family AT3G12250 63.0 1.5e-52 203.8
Cmetu10g0198 . 1 331 bZIP Transcription Factor Family AT1G68640 68.6 1.2e-119 427.2
Cmetu03g1598 . 6 333 bZIP Transcription Factor Family AT1G68640 67.4 1.3e-115 413.7
Cmetu04g2941 . 135 468 bZIP Transcription Factor Family AT1G68640 65.9 1.5e-111 400.2
Cmetu04g1763 . 217 523 bZIP Transcription Factor Family AT1G68640 55.3 4.5e-87 318.9
Cmetu12g1185 . 181 459 bZIP Transcription Factor Family AT1G68640 57.4 6.5e-86 315.1
Cmetu11g0605 . 159 466 bZIP Transcription Factor Family AT1G68640 52.5 2.2e-78 290.0
Cmetu03g2097 . 13 317 bZIP Transcription Factor Family AT1G68640 50.2 4.7e-68 255.8
Cmetu03g0084 . 31 346 bZIP Transcription Factor Family AT1G43700 53.6 5.7e-66 248.4
Cmetu01g1904 . 12 293 bZIP Transcription Factor Family AT1G43700 52.8 1.1e-64 244.2
Cmetu06g1979 . 43 358 bZIP Transcription Factor Family AT2G31370 67.0 3.0e-103 372.5
Cmetu06g0081 . 75 369 bZIP Transcription Factor Family AT2G31370 62.1 4.7e-88 322.0
Cmetu10g0991 . 25 248 bZIP Transcription Factor Family AT2G31370 51.8 3.6e-48 189.5
Cmetu01g1234 . 1 262 bZIP Transcription Factor Family AT3G58120 53.9 1.6e-66 250.0
Cmetu03g1833 . 17 321 bZIP Transcription Factor Family AT3G56850 56.5 6.7e-71 264.6
Cmetu06g1825 . 1 345 bZIP Transcription Factor Family AT1G32150 62.7 7.6e-99 357.8
Cmetu04g2968 . 1 345 bZIP Transcription Factor Family AT1G32150 60.4 1.2e-96 350.5
Cmetu06g1979 . 1 357 bZIP Transcription Factor Family AT1G06070 68.0 6.1e-118 421.4
Cmetu06g0081 . 56 363 bZIP Transcription Factor Family AT1G06070 62.9 2.7e-94 342.8
Cmetu01g0373 . 382 543 bZIP Transcription Factor Family AT1G06070 61.0 2.1e-38 157.1
Cmetu01g1050 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.1e-37 154.8
Cmetu03g1692 . 88 323 bZIP Transcription Factor Family AT5G24800 51.4 6.3e-47 184.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000658 3 3 2 3 3 1 5 3 2 3 2 2 4 3 3 5 2 5 5 3 3 3 3 3 3 3 3 9 3 3 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7286 PF00170 bZIP_1 2.50E-09 CL0018 Cmetu TF