Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1282 ATGGCTTCCCCACCTAGAACCATCCTTTTCACACTACTCGTTTTCTCCGCCATCGCCACCGTTTCCCTTGCTCAAACACCACCGCGCTTTAACTGCAGCTCCACGTCCAAATGCCATTCTCTAATCGACTACATTCCCCCAAACGCCACCACCATTGCCGCCGTGGAGAAACTCTTCCAGGTCAAACACCTCCTCTCCTTCCTCGGCGCCAACAACCTTCCGCCCAACACCTTGTCGAATTTTTCCTTACCGGCCTCTCGTAAGATCAAGATTCCATTCAACTGCAAGTGCAACAACGGGACTGGTCTCTCTGATAAACTTCCGATTTACACAGTCCAAAGCGGCGATTCGCTCGACAAAATCGCGGAAGTCACTTTCGCTAGACTCGTAACGTTCCTTCAAATCCAGATTGCGAATGGACTTCCTGATCCAAATAAAATTGATGTAGGGCAAAAGCTGTGGATTCCGCTGCCGTGTAGCTGCGATGAAGTGGATGGAAACAGAGTCGTTCATTACGGACATTTGGTGGAAATGGGAAGCTCCATTTCGGCGATTGCCGGAAGGTATAATGTGTCGGAGGAGACGATCTTGAAGCTGAATGGAATTGCAGATGCAAAAGATCTTCAAGCTTCTCAAGTTCTTGACATTCCTCTTAAAGCTTGTTCATCAGTGATCAGGAAAGACTCTTTAGACTTCCCGTTCCTTCTCTCGAACGATACGTACGATTACACGGCGAACAACTGTGTGTTGTGTCAGTGTGATGCTGCAAAAACTGGATTCTTGACTGTAAGCCATCACAGTTGA 804 48.01 MASPPRTILFTLLVFSAIATVSLAQTPPRFNCSSTSKCHSLIDYIPPNATTIAAVEKLFQVKHLLSFLGANNLPPNTLSNFSLPASRKIKIPFNCKCNNGTGLSDKLPIYTVQSGDSLDKIAEVTFARLVTFLQIQIANGLPDPNKIDVGQKLWIPLPCSCDEVDGNRVVHYGHLVEMGSSISAIAGRYNVSEETILKLNGIADAKDLQASQVLDIPLKACSSVIRKDSLDFPFLLSNDTYDYTANNCVLCQCDAAKTGFLTVSHHS 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4618026 4623989 - PI0019753.1 Cmetu01g1282 346556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1282 267 ProSiteProfiles LysM domain profile. 108 155 IPR018392 -
Cmetu01g1282 267 SUPERFAMILY LysM domain 109 157 IPR036779 -
Cmetu01g1282 267 CDD LysM 109 155 IPR018392 -
Cmetu01g1282 267 SMART LysM_2 173 217 IPR018392 -
Cmetu01g1282 267 SMART LysM_2 109 156 IPR018392 -
Cmetu01g1282 267 Gene3D LysM domain 163 225 IPR036779 -
Cmetu01g1282 267 ProSiteProfiles LysM domain profile. 172 216 IPR018392 -
Cmetu01g1282 267 Pfam LysM domain 110 156 IPR018392 -
Cmetu01g1282 267 Pfam LysM domain 175 217 IPR018392 -
Cmetu01g1282 267 Gene3D LysM domain 108 162 IPR036779 -
Cmetu01g1282 267 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 9 257 - -
Cmetu01g1282 267 SUPERFAMILY LysM domain 173 217 IPR036779 -
Cmetu01g1282 267 CDD LysM 179 216 IPR018392 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1282 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g1282 . 24 262 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 50.4 8.4e-65 244.6
Cmetu03g0754 . 15 395 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 74.2 6.3e-160 560.8
Cmetu03g0754 . 15 421 LysM Receptor-like Protein (LYPs) Gene Family AT1G77630 62.4 3.4e-137 485.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012966 0 1 1 1 1 1 1 1 0 0 1 1 1 1 1 0 1 2 1 1 0 0 1 1 2 0 1 2 2 2 28