Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1478 ATGGCCAAACCCAAGGCTCCGAGGCAAACCCTAGACTCTTACACTGTCAAACGCATCAACAAAACCATTAAAGGTAATACAATCCCACTGTTTCCTCTTCCTTTTTTCTTGGAATCCTTCCATTTTCCCTCCCTTTCTGATCTTTTGCAATTTTTCGGGCTTTTCTTCTCCTTAGCCGGCGATTGCGTGCTTATGAGGCCCTCTGAACCTTCGAAGCCTTCGTATGTTGCTAAAATTGAAAAGATTGAGGCTGATTCTCGTGGGGGCAATGTGAAAGTCCATGTTCGCTGGTATTACCGGCCGGAGGAATCAATTGGTGGTCGGAGACAGTTTCATGGCTCGAAGGAGCTCTTTCTTTCCGACCATTTTGACGTTCAAAGCGCCGATACCATCGAGGGAAAGTGTACGGTCCATACGTTTAAGAATTATACCAAGCTTGATGCCGTTGGAAATGATGATTATTTTTGCCGTTTCGACTATAATTCCACTACTGGAGCTTTCAATCCCGATCGGGTGGCTGTGTATTGCAAGTGTGAGATGCCTTATAATCCTGATGATCTAATGGTTCAGTGCGAGAGCTGCAGTGATTGGTTTCATCCTGCTTGTATAGAAATGACTGCAGAAGACGCTAAAAAGCTTGACCATTTCTACTGTGAAAGTTGTTCTTCAGAGGGTCAAAAGAAGTTGCAGAATTCACAGTCTACATCTAAAGTTGCAGAGACAAAGGTAGTTGTTTCGTAA 741 43.99 MAKPKAPRQTLDSYTVKRINKTIKGNTIPLFPLPFFLESFHFPSLSDLLQFFGLFFSLAGDCVLMRPSEPSKPSYVAKIEKIEADSRGGNVKVHVRWYYRPEESIGGRRQFHGSKELFLSDHFDVQSADTIEGKCTVHTFKNYTKLDAVGNDDYFCRFDYNSTTGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPACIEMTAEDAKKLDHFYCESCSSEGQKKLQNSQSTSKVAETKVVVS 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5883247 5888416 - PI0020423.7 Cmetu01g1478 346752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1478 246 Gene3D - 56 169 IPR043151 -
Cmetu01g1478 246 ProSiteProfiles Zinc finger PHD-type profile. 173 224 IPR019787 -
Cmetu01g1478 246 SMART PHD_3 175 222 IPR001965 -
Cmetu01g1478 246 ProSiteProfiles BAH domain profile. 55 171 IPR001025 GO:0003682
Cmetu01g1478 246 SUPERFAMILY FYVE/PHD zinc finger 165 227 IPR011011 -
Cmetu01g1478 246 CDD BAH_BAHCC1 60 191 - -
Cmetu01g1478 246 ProSitePatterns Zinc finger PHD-type signature. 176 221 IPR019786 -
Cmetu01g1478 246 SMART BAH_4 54 171 IPR001025 GO:0003682
Cmetu01g1478 246 Pfam BAH domain 60 170 IPR001025 GO:0003682
Cmetu01g1478 246 PANTHER OS08G0421900 PROTEIN 5 242 - -
Cmetu01g1478 246 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 237 IPR013083 -
Cmetu01g1478 246 Pfam PHD-finger 175 223 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1478 K25868 - - csv:101211114 419.083
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1016 Cmetu-Chr1:3485915 Cmetu01g1478 Cmetu-Chr1:5883247 4.20E-83 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g8 . . . . . Bpe12g00087 . . Cmo19g00694 . . . . . Sed05g2305 Cpe04g00115 Cpe15g00553 Bhi05g01787 Tan02g0774 Cmetu01g1478 . Hepe02g0245 . . Cla02g00500 Cam02g0510 Cec02g0510 Cco02g0517 Clacu02g0512 Cmu02g0508 Cre02g0841 Cone12ag1172 Cone8ag1219 . . . Csa07g00017 . Cme01g01365 Blo04g00526 Blo13g00542 Bda15g01076 Bda14g00569 Bpe15g00854 . Bma03g00563 Bma08g00787 . . . . . . Car19g00525 . . . . . . . . . . . . . . . . Lsi11g01125 . Chy01g00760 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000538 4 7 4 5 4 2 5 3 2 2 2 2 4 3 2 4 2 4 5 2 2 3 3 3 3 3 3 10 9 2 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7302 PF01426 BAH 2.80E-21 No_clan Cmetu TR