Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1579 ATGATTGGCGACAAGAAATCGATTATACCTCGTCAATCTTCCTATAACTCTTTGTATTTGAATCCCCTCACTGACCTCCGCCACAACCGTAGCTGCAGCGACGGCGGCGGATTACGGCAAGGTAAAGAGAACTTAACCCCTAATACGAAGGATAAACAGAGAGATGAAGCTGCAGTTCTTTGCGACAAAGAAAATGCGATTCCGATTAATGGGTTTTGTGCTAATTCGAAGCAGCAATTTGGGGATTTTAAGTCATTTTCAACTGGAAAGGCTTTGAAGCCTTCTTCACTTCATCTCTGTATGCAAATGAACGAGCCTGATAAGGTTTTTGCGTCTAGATTGTGGGATGGAACTGATTCTGAACATTCGAGTTCTTTGAAGATATGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCTACTTTGCCTAACAGGTCATTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCTGATGGCCTTCATGGTGGAGCCTTCTATTCTCTATACACAAATGAAGGGAAGGGGCGGCAGGACCGAAAGTTGGCAGTGGCTCGTCATCGACGACGAAACGGGAGGTCAGAGTATAAAATAGCTCAGAGTACAAGGGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGAAGCCGTCTGAAACCGATCCCGTGCCAGTCGAGATCGCTTCTGGGTGCTGTAACATTCATGCCTACAATAACCACTTGGACAGGCAGCCATAGGAGCATGAAGGCTTTCATCCCCAAGCATCAATCAATGCAGCTGAAAAACACCAATCAGGTGCAGCACACAGCAGGGCTTCCAAGGGAGTGGGAGGAAGAAAAGGCTAAAGCTCACCAGCTTGTTTCTAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAAACCTCCGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGTAAACAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCACTGACAGGTTATCAAGCATTTTGCATATGTTTGGCTTCCATAGATTCAAAACTGTGTTGCTCAGTATGA 1221 44.14 MIGDKKSIIPRQSSYNSLYLNPLTDLRHNRSCSDGGGLRQGKENLTPNTKDKQRDEAAVLCDKENAIPINGFCANSKQQFGDFKSFSTGKALKPSSLHLCMQMNEPDKVFASRLWDGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHRRRNGRSEYKIAQSTRGILCNADDSFVGSMTTNLVGSKYHIWDQGSRLKPIPCQSRSLLGAVTFMPTITTWTGSHRSMKAFIPKHQSMQLKNTNQVQHTAGLPREWEEEKAKAHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26695769 26699732 - PI0028763.1 Cmetu01g1579 346853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1579 406 PANTHER TUBBY-RELATED 108 403 - -
Cmetu01g1579 406 Pfam Tub family 152 400 IPR000007 -
Cmetu01g1579 406 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Cmetu01g1579 406 PRINTS Tubby superfamily signature 227 251 IPR000007 -
Cmetu01g1579 406 PRINTS Tubby superfamily signature 383 405 IPR000007 -
Cmetu01g1579 406 PRINTS Tubby superfamily signature 362 381 IPR000007 -
Cmetu01g1579 406 SUPERFAMILY Tubby C-terminal domain-like 139 404 IPR025659 -
Cmetu01g1579 406 Gene3D Tubby Protein; Chain A 147 399 IPR025659 -
Cmetu01g1579 406 MobiDBLite consensus disorder prediction 31 53 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1579 K19600 - - csv:101216780 799.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1579 Cmetu-Chr1:26695769 Cmetu06g1321 Cmetu-Chr6:4729230 4.70E-11 dispersed
Cmetu01g1579 Cmetu-Chr1:26695769 Cmetu08g0022 Cmetu-Chr8:21685910 2.80E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g941 . Blo06g00639 . . . Bpe10g00587 . . Cmo08g00573 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g02648 Csa07g02085 . Cme01g02537 . . . . . . . . Sed07g0722 . . . . Car08g00491 . . . Bhi09g00549 Tan06g0484 Cmetu01g1579 . . . . Cla09g00311 Cam09g0341 Cec09g0343 Cco09g0331 Clacu09g0346 . Cre09g0327 . . Chy01g01931 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0268 . 1 430 TUB Transcription Factor Family AT1G76900 73.4 1.9e-178 622.5
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT1G76900 69.9 1.6e-169 592.8
Cmetu03g0406 . 1 432 TUB Transcription Factor Family AT1G76900 69.3 6.2e-169 590.9
Cmetu11g1152 . 13 386 TUB Transcription Factor Family AT1G76900 50.6 4.4e-114 408.7
Cmetu06g0547 . 174 428 TUB Transcription Factor Family AT1G25280 74.3 8.6e-102 367.1
Cmetu03g0268 . 173 430 TUB Transcription Factor Family AT1G25280 69.4 4.6e-95 344.7
Cmetu03g0406 . 175 432 TUB Transcription Factor Family AT1G25280 70.8 1.1e-93 340.1
Cmetu06g1321 . 214 447 TUB Transcription Factor Family AT1G25280 53.9 1.0e-70 263.8
Cmetu07g1219 . 177 414 TUB Transcription Factor Family AT1G25280 55.8 3.0e-70 262.3
Cmetu04g0475 . 180 411 TUB Transcription Factor Family AT1G25280 53.4 6.2e-68 254.6
Cmetu11g1152 . 154 386 TUB Transcription Factor Family AT1G25280 53.6 5.2e-67 251.5
Cmetu08g0022 . 176 414 TUB Transcription Factor Family AT1G25280 51.7 1.2e-63 240.4
Cmetu11g1152 . 98 386 TUB Transcription Factor Family AT5G18680 62.8 5.8e-99 357.8
Cmetu06g1321 . 158 447 TUB Transcription Factor Family AT5G18680 62.8 3.2e-97 352.1
Cmetu03g0268 . 112 430 TUB Transcription Factor Family AT5G18680 53.4 2.8e-85 312.4
Cmetu03g0406 . 112 432 TUB Transcription Factor Family AT5G18680 51.8 3.4e-83 305.4
Cmetu06g0547 . 113 428 TUB Transcription Factor Family AT5G18680 52.8 1.3e-82 303.5
Cmetu07g1219 . 115 414 TUB Transcription Factor Family AT5G18680 52.5 3.0e-79 292.4
Cmetu07g1219 . 1 414 TUB Transcription Factor Family AT2G18280 61.9 3.5e-144 508.4
Cmetu08g0022 . 1 414 TUB Transcription Factor Family AT2G18280 59.8 1.1e-134 476.9
Cmetu04g0475 . 1 411 TUB Transcription Factor Family AT2G18280 60.2 6.6e-127 451.1
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT2G18280 53.1 3.0e-119 425.6
Cmetu03g0268 . 1 430 TUB Transcription Factor Family AT2G18280 52.3 8.1e-117 417.5
Cmetu06g1321 . 61 447 TUB Transcription Factor Family AT2G18280 54.3 1.4e-116 416.8
Cmetu03g0406 . 1 432 TUB Transcription Factor Family AT2G18280 51.1 1.2e-112 403.7
Cmetu11g1152 . 1 386 TUB Transcription Factor Family AT2G18280 52.7 1.8e-111 399.8
Cmetu07g1074 . 48 379 TUB Transcription Factor Family AT2G18280 50.7 3.0e-95 345.9
Cmetu06g1321 . 61 447 TUB Transcription Factor Family AT2G47900 68.5 1.6e-160 562.8
Cmetu11g1152 . 1 386 TUB Transcription Factor Family AT2G47900 67.7 9.8e-158 553.5
Cmetu03g0268 . 1 430 TUB Transcription Factor Family AT2G47900 55.7 1.9e-132 469.5
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT2G47900 56.6 1.0e-130 463.8
Cmetu03g0406 . 1 432 TUB Transcription Factor Family AT2G47900 56.4 1.7e-130 463.0
Cmetu07g1219 . 1 414 TUB Transcription Factor Family AT2G47900 56.4 1.0e-122 437.2
Cmetu04g0475 . 10 411 TUB Transcription Factor Family AT2G47900 55.5 1.9e-116 416.4
Cmetu08g0022 . 1 414 TUB Transcription Factor Family AT2G47900 51.3 9.6e-113 404.1
Cmetu07g1074 . 49 379 TUB Transcription Factor Family AT2G47900 51.0 8.5e-101 364.4
Cmetu01g1579 . 82 297 TUB Transcription Factor Family AT1G16070 63.2 7.5e-75 277.7
Cmetu03g0268 . 67 430 TUB Transcription Factor Family AT1G43640 70.6 8.2e-148 520.4
Cmetu06g0547 . 66 428 TUB Transcription Factor Family AT1G43640 67.7 1.0e-145 513.5
Cmetu03g0406 . 65 432 TUB Transcription Factor Family AT1G43640 65.8 1.5e-141 499.6
Cmetu06g1321 . 109 447 TUB Transcription Factor Family AT1G43640 53.4 2.3e-105 379.4
Cmetu11g1152 . 47 386 TUB Transcription Factor Family AT1G43640 51.9 2.3e-105 379.4
Cmetu04g0475 . 69 411 TUB Transcription Factor Family AT1G43640 50.5 2.4e-99 359.4
Cmetu08g0022 . 67 414 TUB Transcription Factor Family AT1G43640 50.7 4.0e-94 342.0
Cmetu04g0475 . 34 411 TUB Transcription Factor Family AT1G47270 63.1 1.2e-133 473.4
Cmetu07g1219 . 34 414 TUB Transcription Factor Family AT1G47270 58.0 1.3e-122 436.8
Cmetu08g0022 . 33 414 TUB Transcription Factor Family AT1G47270 56.6 2.7e-120 429.1
Cmetu06g0547 . 1 428 TUB Transcription Factor Family AT1G47270 52.1 1.7e-114 409.8
Cmetu03g0268 . 30 430 TUB Transcription Factor Family AT1G47270 51.7 2.0e-112 402.9
Cmetu03g0406 . 48 432 TUB Transcription Factor Family AT1G47270 54.5 3.5e-112 402.1
Cmetu11g1152 . 1 386 TUB Transcription Factor Family AT1G47270 51.0 3.1e-108 389.0
Cmetu06g1321 . 61 447 TUB Transcription Factor Family AT1G47270 50.2 2.7e-104 375.9
Cmetu07g1074 . 1 379 TUB Transcription Factor Family AT1G53320 71.1 3.3e-155 545.0
Cmetu07g1219 . 20 414 TUB Transcription Factor Family AT1G53320 50.9 4.9e-103 371.7
Cmetu11g1152 . 22 386 TUB Transcription Factor Family AT1G53320 50.4 4.9e-103 371.7
Cmetu06g1321 . 158 447 TUB Transcription Factor Family AT3G06380 63.8 3.1e-97 352.1
Cmetu11g1152 . 98 386 TUB Transcription Factor Family AT3G06380 62.1 1.4e-94 343.2
Cmetu06g0547 . 117 428 TUB Transcription Factor Family AT3G06380 53.8 6.2e-82 301.2
Cmetu03g0268 . 116 430 TUB Transcription Factor Family AT3G06380 51.6 9.0e-81 297.4
Cmetu03g0406 . 116 432 TUB Transcription Factor Family AT3G06380 52.7 2.6e-80 295.8
Cmetu07g1219 . 119 414 TUB Transcription Factor Family AT3G06380 54.1 4.5e-80 295.0
Cmetu04g0475 . 120 411 TUB Transcription Factor Family AT3G06380 51.8 4.2e-78 288.5
Cmetu08g0022 . 118 414 TUB Transcription Factor Family AT3G06380 50.2 9.6e-75 277.3
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7309 PF01167 Tub 4.30E-45 CL0395 Cmetu TF