Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1582 ATGCCAAAACTTCTCTTCTTCCTCTCACTCCTCATTCCCCTTCTCTCCGTCGCTGCCGCCGCCGCCACCAATCGCCACCCTCTCGACCCACTCTCCTCGTCCGAATTCGAACTCATCCGATCACTCATAACTAATTCCAACCCCTCCACCAACATCGCCTTCCAATACGTCGCTCTCGCCGACCCCACGAAGCAATCCGTCATCTCATGGCTTTCAAACCCCAAAACCCGGCCGCCACCCCGCCGCGCCACCGCCACCGTCCGATTCAACAAAGCCACACACGAGATCCTCATAGACCTAGACAAAAAAACCATGATCTCGAACAGGGTCTACTCCGGTACAGGGTACGCACCGTTCACATTTGAGGAGCAGTTCGCGGCCGCCGCACTGCCGGCGTCACACCCTCCGTTCGCGGCGGCTATGAAAAAAAGAGGGCTGAAATTGGAAGAAGTGGTTTGTGCGTGTTTTAGCGTTGGATGGTTTGGGGAAAAGAGGAAAGTGGAACAGAGGATTGTGAAAGTTCAGTGTTATTATTTGGATGGGAGTTTGAATTTGTATATGAGACCTGTGGAAGGAGCGACGGTGACAGTTGATCTTGATGAGATGAAGATTATTGGGTTTGTTGATAGATATGTGGTTCAGATTCCAAAGGCAGATGGAACTGAGTACAGAGAATCAATGCTTAAGCCTCCGTTTTTGCCACCTTTGAACGGAATTAAGATGCTACAGCCGGACGGTCCTAGCTTCAAACTCAATGGTCATTCTGTTAGTTGGGCGAATTGGAATTTTCATGTAAGCTTAGATGAGAGAGCAGGGCCAATTATATCATTAGCATCAATCTACGACATCCGAAAGCAAAAACACCGACAAGTAATGTATAGAGGTTTCATATCAGAACTGTTTGTTCCGTACATGGATTTAAACGAAGAATGGTACTATCGAACGTTTTTTGACGCCGGCGAGTACGGCTTCGGCCAGTGTGCAGTGCCATTACAGCCGCTTCGAGATTGCCCAGAAAATGCAGTGTTTATGGACACTTACATGGCTGCCGGAGATGGTAGACCAATGAAAATGTCTAACACATTTTGTATATTTGAACGACACGCTGGTGATATCATGTGGCGCCACACAGAGGGCACCATTCCCAATACACTTATTAGAGAGACGAGGGCAGAAGTTAGCTTAGTAGTGAGAATGGTGGCAGCAGTGGGCAACTATGACTACATTGTCGATTGGGAATTTAAGCAGAGTGGCTCCATTATTGCTAATGTTGGGTTAACTGGTTTGCTAGAAGTTAGGGCATCAAAGTACACTCACAACGACCAAATAAAGGAGGAAGTTTATGGGTCGTTGTTAGCCGAGAATACAATTGGCGTCCGCCATGATCACTTCCTCATCTACCACCTCGATCTCGACATTGACGGTGGTGCCAACTCCTTCCTCAAATCCAACCTCCGCACTATCCGATCCCAAGAACCTGATTATCCTAGGCGAAGTTATTGGACGGTTGTCTCCGAGACGGCCAAAACAGAGGCTGATGCCAGGATCAAATTTGGCTTCCAAGAGGCTGAGTTGGCCGTCGTTAATCCCAATCGGAGGACCAGAATGGGGAACCCCGTCGGTTACCGTTTAATTCCGAAGTCGACGACAATTCCCCTTTTGAGTGCTGATGATTACCCCCAAATTAGGGGAGCTTTTTCTAATTACAATGTGTGGGTTACACCATATAATCACTCTGAGAAATGGGCATCTGGACTTTACACTGACCAGAGTCGTGGAGACGATACCTTGGCTACTTGGAGTCTCAGGGACAGGGAGATAGAGAACAAGGACATTGTGATGTGGTACACAATGGGGTTTCATCATGTGCCTTGCCAAGAAGATTTCCCGTTAATGCCAACTTTGAGCAGTGGGTTTGAGCTTAGACCAACCAATTTCTTTGAGAGCAATCCTGTGCTTAAAGTCACCCCACCTCCAATAGTCAACTTCACCAATTTCCCCCAGACTTCAAACCATAATTAA 2022 47.73 MPKLLFFLSLLIPLLSVAAAAATNRHPLDPLSSSEFELIRSLITNSNPSTNIAFQYVALADPTKQSVISWLSNPKTRPPPRRATATVRFNKATHEILIDLDKKTMISNRVYSGTGYAPFTFEEQFAAAALPASHPPFAAAMKKRGLKLEEVVCACFSVGWFGEKRKVEQRIVKVQCYYLDGSLNLYMRPVEGATVTVDLDEMKIIGFVDRYVVQIPKADGTEYRESMLKPPFLPPLNGIKMLQPDGPSFKLNGHSVSWANWNFHVSLDERAGPIISLASIYDIRKQKHRQVMYRGFISELFVPYMDLNEEWYYRTFFDAGEYGFGQCAVPLQPLRDCPENAVFMDTYMAAGDGRPMKMSNTFCIFERHAGDIMWRHTEGTIPNTLIRETRAEVSLVVRMVAAVGNYDYIVDWEFKQSGSIIANVGLTGLLEVRASKYTHNDQIKEEVYGSLLAENTIGVRHDHFLIYHLDLDIDGGANSFLKSNLRTIRSQEPDYPRRSYWTVVSETAKTEADARIKFGFQEAELAVVNPNRRTRMGNPVGYRLIPKSTTIPLLSADDYPQIRGAFSNYNVWVTPYNHSEKWASGLYTDQSRGDDTLATWSLRDREIENKDIVMWYTMGFHHVPCQEDFPLMPTLSSGFELRPTNFFESNPVLKVTPPPIVNFTNFPQTSNHN 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7698439 7704364 - PI0028568.1 Cmetu01g1582 346856

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1582 673 FunFam Amine oxidase 249 664 - -
Cmetu01g1582 673 PANTHER COPPER AMINE OXIDASE 23 658 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmetu01g1582 673 ProSitePatterns Copper amine oxidase copper-binding site signature. 617 630 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmetu01g1582 673 SUPERFAMILY Amine oxidase N-terminal region 115 224 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmetu01g1582 673 Gene3D - 119 215 - -
Cmetu01g1582 673 Gene3D - 24 117 - -
Cmetu01g1582 673 Pfam Copper amine oxidase, enzyme domain 240 653 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmetu01g1582 673 SUPERFAMILY Amine oxidase catalytic domain 227 661 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmetu01g1582 673 FunFam Amine oxidase 118 213 - -
Cmetu01g1582 673 Pfam Copper amine oxidase, N3 domain 118 215 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmetu01g1582 673 Gene3D Copper amine oxidase, catalytic domain 249 664 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmetu01g1582 673 Pfam Copper amine oxidase, N2 domain 26 110 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Cmetu01g1582 673 SUPERFAMILY Amine oxidase N-terminal region 25 114 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1582 K00276 - - csv:101210998 1263.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1582 Cmetu-Chr1:7698439 Cmetu05g1159 Cmetu-Chr5:21063494 2.50E-291 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g486 . . Bda03g00890 . Bpe04g00834 . Bma04g00786 . Cmo08g01122 Cmo17g00225 . . . . . . . . . . . . . . Cla06g00581 Cam06g0619 Cec06g0621 Cco06g0627 Clacu06g0606 Cmu06g0599 Cre06g1367 . . . Cone4ag0238 . . . . . . . . . . . . Sed01g3969 . . Cma08g01145 Cma17g00239 Car08g01028 Car17g00217 Cpe12g00201 . Bhi12g01713 Tan06g2525 Cmetu01g1582 Lac12g2283 Hepe03g0194 . Lcy13g0279 . . . . . . . Lsi09g01323 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97