Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1624 ATGACGCAGCTAGTGAGGCCTGGGTTCAAGCCCAGGCCTTCGAGAATTTCTGGAAGGGCTCCCTTTGGGGTAAATAATAATCGTGACCGTGAAAAAGAGTTATCGGGGATGGATTTTTGGTTCATTCTTCTTGTTGTTACCGTTCGGGATCTGGTCGTTCTTCAGATTTATCGGAATAGGGTGTTCATCTGGCGAACAAAGAAGAGAAACATGATTTCTAGATCTTACACAAATCTTTTAGATTTGGCTTCTGGAAATTTTCCAGCAATGGAAGTTAAAAAGAAGCGATTTCCGCGGGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGATGATGATCAAGCCTACAGTGTCACATCTGAAAACCCGTCCTCAATTTCGTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAACGAAGGGAGGATGATAATTCATGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGATTACCAGAAGATATGGAGATTCTCTACGTTGGTTCGTTGAAAGTGGATATCCAACCAGAAGAACAAGATGAGGTCTCCCAGATTTTGTTGGAGAAATTTAAGTGTATTCCTGCATTTTTGCCTCCTCATATTTTGGAAAAGTTTTATGATGGTTTCTGCAAGAGGCATTTGTGGCCTCTTTTTCATTATATGTTGCCATATTCTGCTGATCAGAAGGGTCGATTCGATCGCTCCATGTGGGAAGCTTATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTAGTCGAGGTCATCAACCCAGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCCACTTTCTTGAGGAGGCGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGTACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATTGGATTCCACACTTTCGATTATGCTCGTCATTTCCTTTCTTGTTGCAGCCGAATGTTGGGTTTGGAATACCAGTCAAAAAGGGGATATCTTGGATTGGAATACTATGGCAGAACGATTGGGATAAAAATAATGCCTGTTGGTATTCATATGAGTCGGATTGAATCGGTGATGAAACTGGCAGATGAGGATGCTAAGACTAGGGAACTCACACAGCAATTTGCAGGGAAGACGGTGTTGCTTGGTGTTGATGATTTGGATATTTTCAAAGGTATCAACTTGAAATTGTTAGCTATGGAACAGGTACTAAAGCAACATCCAAAGTGGCAGGGAAAGGCTGTACTGATCCAAATTGTAAATCCTGCCAGAGGTAAGGGAAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGTAGAAGGATCAACAAGGAGTATGGACATCCTGGTTATGAGCCAATAGTACTTCTCGACAGGCATGTGCCAATCACTGAAAGGGTTGCTTATTATAGCATTGCTGAATGTGTAGCTGTAACTGCTGTTAGAGATGGTATGAACCTAACTCCTTATGAGTACGTTGTCTGTAGACAGGGAATATCCACCTCCCAAAAATGTTTGAACTTCAGTGGACCAAAAAAGAGCATGCTCGTCATATCTGAATTTATTGGGTGCTCTCCATCACTGAGTGGAGCATTTCGTGTTAATCCATGGAATGTGGAAAAGACAGCAGAGGCTCTGAATGAAGCAATCTCAATGGCTGATTCAGAGAAGCAGCTGCGACATGAGAAGCATTATCGTTACGTTGCCACACACGACGTCGCTTATTGGTCTCGTAGTTTCTTGCAAGATATGGAGAGAACTTGCTCAGATCATTTCAGGAGAAGATGTTGGGGAATAGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTATCAGTAGATGCCATTGTATCAGCTTACAGTAGGGCCGAAAGTCGGGCCATTCTGTTGGACTATGATGGCACTGTGATGCCCCAAAACTCCATAAATAAGTCACCTAGTGCGCAGGTTATCTCTATCCTTAACACGCTTTGTGCAGATGCAAAAAACGTGGTCTTCATTGTGAGTGGACGAGGGAGGGACAGCTTAAGCAAGTGGTTTCGTCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTTTTGAGGCAGTCACAAAACGAAGAGTGGAAGATCTGCGGCCAAAGTTCTGATTTTGGATGGATGCACATTGCCGAGCCTGTTATGAAATTATATACGGAGGCTACAGATGGTTCTTCTATTGAAAGAAAGGAAAGTGCTTTGGTTTGGCAGTATCGAGATGCAGATCCTGGTTTTGGATCATCCCAGGCAAAGGAGATGTTGGATCATTTAGAAAGTGTTTTGGCAAACGAACCCGTTGCAGTCAAAAGCGGCCAATTTATTGTAGAAGTGAAACCGCAGGGGGTTACCAAAGGCCTTGTGGCTGAAAAGATTTTTTCATCAATGGCAGAGGATGGAAAGCTTGCTGACTTTGTGCTGTGTATTGGTGACGACAGATCTGATGAGGACATGTTTGAAATAATTGGAAATGCATTGTCCGGTAACATTCTTTCTCCAACGACGTCAGTTTTTGCCTGCACTGTTGGACAAAAACCAAGCAAAGCCAAATATTATTTAGATGATACAGCCGAAGTAATAAGCATGCTTGAGTACCTGGCTGAAGCTTCTAGTCCATTACCATCCTCTGATGATGAAGAAGGTGAAAATGCTTCTTGA 2781 42.0 MTQLVRPGFKPRPSRISGRAPFGVNNNRDREKELSGMDFWFILLVVTVRDLVVLQIYRNRVFIWRTKKRNMISRSYTNLLDLASGNFPAMEVKKKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEILYVGSLKVDIQPEEQDEVSQILLEKFKCIPAFLPPHILEKFYDGFCKRHLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMSRIESVMKLADEDAKTRELTQQFAGKTVLLGVDDLDIFKGINLKLLAMEQVLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYEPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTSQKCLNFSGPKKSMLVISEFIGCSPSLSGAFRVNPWNVEKTAEALNEAISMADSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSDHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSAYSRAESRAILLDYDGTVMPQNSINKSPSAQVISILNTLCADAKNVVFIVSGRGRDSLSKWFRPCKKLGIAAEHGYFLRQSQNEEWKICGQSSDFGWMHIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGKLADFVLCIGDDRSDEDMFEIIGNALSGNILSPTTSVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSDDEEGENAS 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2538089 2543899 - PI0023755.1 Cmetu01g1624 346898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1624 926 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 789 920 - -
Cmetu01g1624 926 Gene3D Glycogen Phosphorylase B; 123 383 - -
Cmetu01g1624 926 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 98 909 IPR001830 GO:0003824|GO:0005992
Cmetu01g1624 926 NCBIfam trehalose-phosphatase 658 908 IPR003337 GO:0003824|GO:0005992
Cmetu01g1624 926 FunFam Alpha,alpha-trehalose-phosphate synthase 384 597 - -
Cmetu01g1624 926 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 130 616 - -
Cmetu01g1624 926 CDD HAD_TPP 661 900 - -
Cmetu01g1624 926 Gene3D Glycogen Phosphorylase B; 384 597 - -
Cmetu01g1624 926 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 659 776 - -
Cmetu01g1624 926 CDD GT20_TPS 130 613 IPR001830 GO:0003824|GO:0005992
Cmetu01g1624 926 FunFam Trehalose-6-phosphate synthase 2 743 822 - -
Cmetu01g1624 926 Pfam Trehalose-phosphatase 663 897 IPR003337 GO:0003824|GO:0005992
Cmetu01g1624 926 Gene3D - 788 920 IPR023214 -
Cmetu01g1624 926 Gene3D - 659 761 IPR023214 -
Cmetu01g1624 926 SUPERFAMILY HAD-like 660 908 IPR036412 -
Cmetu01g1624 926 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 123 382 - -
Cmetu01g1624 926 Pfam Glycosyltransferase family 20 130 613 IPR001830 GO:0003824|GO:0005992
Cmetu01g1624 926 NCBIfam HAD-IIB family hydrolase 662 865 IPR006379 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1624 K16055 - - csv:101209914 1721.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1624 Cmetu-Chr1:2538089 Cmetu10g0261 Cmetu-Chr10:18739908 0.00E+00 dispersed
Cmetu04g0191 Cmetu-Chr4:1537877 Cmetu01g1624 Cmetu-Chr1:2538089 0.00E+00 transposed
Cmetu06g2024 Cmetu-Chr6:29814423 Cmetu01g1624 Cmetu-Chr1:2538089 0.00E+00 transposed
Cmetu01g1624 Cmetu-Chr1:2538089 Cmetu12g0972 Cmetu-Chr12:5925067 4.40E-121 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1930 . 45 599 Trehalose Biosynthesis Gene Families AT4G24040 57.2 9.4e-192 667.2
Cmetu01g1624 . 71 911 Trehalose Biosynthesis Gene Families AT1G06410 78.1 0.0e+00 1375.1
Cmetu04g0191 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1347.8
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G06410 66.9 0.0e+00 1127.9
Cmetu10g0261 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 63.0 0.0e+00 1097.4
Cmetu02g0557 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.4 3.8e-305 1044.3
Cmetu07g2039 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.2 1.2e-248 856.3
Cmetu12g0972 . 87 694 Trehalose Biosynthesis Gene Families AT1G16980 64.4 1.7e-239 825.9
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1349.7
Cmetu02g0557 . 1 838 Trehalose Biosynthesis Gene Families AT1G23870 67.8 0.0e+00 1208.7
Cmetu04g0191 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1103.2
Cmetu01g1624 . 71 912 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1096.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G23870 63.2 0.0e+00 1087.4
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.0 0.0e+00 1335.5
Cmetu02g0557 . 1 842 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1223.8
Cmetu04g0191 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.2 0.0e+00 1079.3
Cmetu01g1624 . 71 915 Trehalose Biosynthesis Gene Families AT1G60140 60.1 6.5e-313 1070.1
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G60140 60.7 1.5e-309 1058.9
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G68020 72.2 0.0e+00 1238.4
Cmetu04g0191 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.2
Cmetu01g1624 . 71 914 Trehalose Biosynthesis Gene Families AT1G68020 63.3 0.0e+00 1144.0
Cmetu10g0261 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1112.1
Cmetu02g0557 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1098.6
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.2 0.0e+00 1196.8
Cmetu02g0557 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 64.2 0.0e+00 1107.0
Cmetu04g0191 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.6 1.5e-293 1005.7
Cmetu01g1624 . 71 921 Trehalose Biosynthesis Gene Families AT1G70290 57.6 2.3e-291 998.4
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G70290 57.6 2.9e-278 954.9
Cmetu07g2039 . 1 825 Trehalose Biosynthesis Gene Families AT1G78580 84.2 0.0e+00 1400.2
Cmetu12g0972 . 1 912 Trehalose Biosynthesis Gene Families AT1G78580 74.1 0.0e+00 1356.7
Cmetu10g0261 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cmetu02g0557 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.6 5.4e-299 1023.8
Cmetu04g0191 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.1 7.1e-299 1023.5
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.1e-290 995.3
Cmetu01g1624 . 126 911 Trehalose Biosynthesis Gene Families AT2G18700 59.5 3.5e-290 994.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1353.2
Cmetu04g0191 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1184.5
Cmetu01g1624 . 71 919 Trehalose Biosynthesis Gene Families AT4G17770 63.5 0.0e+00 1163.3
Cmetu10g0261 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 64.0 0.0e+00 1138.6
Cmetu02g0557 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1108.6
Cmetu07g2039 . 93 814 Trehalose Biosynthesis Gene Families AT4G27550 68.0 8.7e-296 1013.1
Cmetu12g0972 . 92 910 Trehalose Biosynthesis Gene Families AT4G27550 60.4 3.9e-288 987.6
Cmetu07g2039 . 1 825 Trehalose Biosynthesis Gene Families AT1G78580 84.2 0.0e+00 1400.2
Cmetu12g0972 . 1 912 Trehalose Biosynthesis Gene Families AT1G78580 74.1 0.0e+00 1356.7
Cmetu07g2039 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 66.2 1.2e-248 856.3
Cmetu12g0972 . 87 694 Trehalose Biosynthesis Gene Families AT1G16980 64.4 1.7e-239 825.9
Cmetu07g2039 . 83 621 Trehalose Biosynthesis Gene Families AT1G17000 62.3 7.3e-194 674.5
Cmetu12g0972 . 92 609 Trehalose Biosynthesis Gene Families AT1G17000 61.1 1.0e-187 654.1
Cmetu07g2039 . 93 814 Trehalose Biosynthesis Gene Families AT4G27550 68.0 8.7e-296 1013.1
Cmetu12g0972 . 92 910 Trehalose Biosynthesis Gene Families AT4G27550 60.4 3.9e-288 987.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT4G17770 79.6 0.0e+00 1353.2
Cmetu04g0191 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1184.5
Cmetu01g1624 . 71 919 Trehalose Biosynthesis Gene Families AT4G17770 63.5 0.0e+00 1163.3
Cmetu10g0261 . 1 839 Trehalose Biosynthesis Gene Families AT4G17770 64.0 0.0e+00 1138.6
Cmetu02g0557 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 62.6 0.0e+00 1108.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G68020 72.2 0.0e+00 1238.4
Cmetu04g0191 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.6 0.0e+00 1170.2
Cmetu01g1624 . 71 914 Trehalose Biosynthesis Gene Families AT1G68020 63.3 0.0e+00 1144.0
Cmetu10g0261 . 1 839 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1112.1
Cmetu02g0557 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.6 0.0e+00 1098.6
Cmetu01g1624 . 71 911 Trehalose Biosynthesis Gene Families AT1G06410 78.1 0.0e+00 1375.1
Cmetu04g0191 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.6 0.0e+00 1347.8
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G06410 66.9 0.0e+00 1127.9
Cmetu10g0261 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 63.0 0.0e+00 1097.4
Cmetu02g0557 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.4 3.8e-305 1044.3
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.2 0.0e+00 1196.8
Cmetu02g0557 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 64.2 0.0e+00 1107.0
Cmetu04g0191 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.6 1.5e-293 1005.7
Cmetu01g1624 . 71 921 Trehalose Biosynthesis Gene Families AT1G70290 57.6 2.3e-291 998.4
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G70290 57.6 2.9e-278 954.9
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.5 0.0e+00 1349.7
Cmetu02g0557 . 1 838 Trehalose Biosynthesis Gene Families AT1G23870 67.8 0.0e+00 1208.7
Cmetu04g0191 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.3 0.0e+00 1103.2
Cmetu01g1624 . 71 912 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1096.6
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G23870 63.2 0.0e+00 1087.4
Cmetu10g0261 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 73.0 0.0e+00 1335.5
Cmetu02g0557 . 1 842 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1223.8
Cmetu04g0191 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.2 0.0e+00 1079.3
Cmetu01g1624 . 71 915 Trehalose Biosynthesis Gene Families AT1G60140 60.1 6.5e-313 1070.1
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT1G60140 60.7 1.5e-309 1058.9
Cmetu10g0261 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.0 2.4e-307 1051.6
Cmetu02g0557 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.6 5.4e-299 1023.8
Cmetu04g0191 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 59.1 7.1e-299 1023.5
Cmetu06g2024 . 1 822 Trehalose Biosynthesis Gene Families AT2G18700 58.8 2.1e-290 995.3
Cmetu01g1624 . 126 911 Trehalose Biosynthesis Gene Families AT2G18700 59.5 3.5e-290 994.6
Cmetu09g1930 . 45 599 Trehalose Biosynthesis Gene Families AT4G24040 57.2 9.4e-192 667.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001233 1 5 3 3 2 2 0 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 3 2 3 3 73