Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1663 ATGTCTTCAACGTCAAATAAGACTGTGTGTTCCAAGACCAGCTTTGACCGATCGAAACATGGGGCTCATGTGGTTGCACAGACCCCAATTGATGCAAAGCTTCATGTAGACTTTGAAGGTTCTGAAAGGTTCTTTGATTACTCTGCATCGGTTGATTTCAATGCCGCTTGTTCCACTAGCAATGTTCATACTTCCACTGTACAGTCATACCTTCAAAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGACGGGGAAAACTTGTCTGTTCTTGCATATAGTGAAAATGCCCCCGAAATGTTGGACTTGGCCCCACATGCTGTGCCTAACATCGAGCAGCAAGAAGCTTTAACTTTTGGAACAGATGTACGAACACTTTTTCGTTCACCCGGAGCTGCAGCTTTGCAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATTCTAGTCCATTGTAGAACTTCTGGTAAACCATTTTATGCAATTTTGCATCGAGTAGATGTGGGATTAATTATAGATCTGGAACCGGTGAACCCAGCTGATGTGCCAGTGACTGCGGCCGGGGCATTGAAATCTTACAAGCTAGCAGCTAAAGCCATCTCAAAATTGCAGTCCTTGCCAAGTGGGAATATATCTCTTTTGTGTGAGGTATTGGTTAAGGAGGTTAGTGATTTGACAGGTTATGATCGAGTAATGGTGTATAAATTCCATGATGATGAACATGGAGAAGTTGTAGCTGAGTGCTGTCGATCAGACTTAGAACCATATCTTGGCTTGCACTACCCGGCTACTGATATACCTCAAGCTTCAAGGTTCCTGTTTTTGAAGAATAAAGTCAGAATGATATGTGATTGTTTGGCACCTCCAGTGAAAGTGCTTCAAGACAGGAGATTAGCTCAGCCATTAAGTTTATGTGGGTCTGCATTGAGGGCTCCTCATGGTTGTCATGCTCGATATATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACAATCAACGAGAATGATAGTGAATCAGAAAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACTAGCCCTAGGTTTGTTCCATTTCCTTTGCGATATGCTTGTGAATTCTTGATTCAAGTATTTGGTATACAGATTAACAAAGAGGTGGAGTTGCAAGCTCAGTTGAAGGAAAAACACATCTTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGATGCTCCGGTAGGAATTGTTACTCAATCTCCTAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGTTACTTGGAGTTACCCCCACAGAGGCGCAAATTAGAAATATAGCTGACTGGCTTCTCAAAGACCATAGTGGAAGCACAGGTTTAAGTACTGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTCTGCGCTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATCACATCTAAGGACTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTAGTGACGAGGATGATGGAAGAAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTGGTGAAGCGGCGTAGCCAACCTTGGGAAGATGTGGAAATGGATGCCATTCATTCACTGCAATTAATCTTACGAGGTTCTTTACAGGATGAAATTGAAGAAGAATGCAAGATGATTACAACTGTCCCACCAGTTGATGAGAAGACACAACAATTGGATGAATTGCGTGTCATTACAAATGAGATGGTTCGCCTAATTGAAACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTTGGCAAGATCAATGGTTGGAACTCCAAAGCCACTGAGCTTACAGGATTGGCTATCCAGGAAGCCATTGGCATGCCCTTAGTTGATTGTCTGGTGAATGATTCTGTGAAGGTGGTAAAGAAAATGCTGTCCTTGGCTATTCAAGGTATTGAAGAGAAGAACATTGAAATCAAACTCAAAACATTTGGAACTGCGGTACAAAATGGTCCAGTGATCTTAGAAGTTAACTCATGTTGTAGCCGAGACTTAAACAATAATGTTGTAGGAGTTTCTTTAATAGGGCAGGATGTTACGAAGCAAAAACTGGTAATGAACCAATACACCCAAATCCAAGGTGATTACACGGGGATTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGGCCGATGGCGAGGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGGTAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACGCTTGAAAACTTTGGATGCTGTGTGAAAGATCACACGTTGACCAAGCTTAGGATACTGCTGCATAGAGTAATTTCAGGCCAGGATACAGAGAAATTTTTGTTTCGGTTCTGTGATCGTGAAGGAAACTACGTTGAATCATTGCTTACCGCAAGCAAAAGGACTGATGCAGAGGGTAATATCACTGGGGTTTTCTTCTTCTTGCACGTGGCTAGTCCAGAACTTCAATATGCTTTGGAGATGCAGCGGATTTCCGAACAAGCTACAGCTGAAAATCTCCATAAATTGGCATATCTGCGTCAAGAAATTCGAAAACCCCTTGATGGGATTACATTTATGCAGAATCTAATGAGTTCATCTGACTTAAGCATAGAGCAAAAACAGCTAATTAAATTGAACACTTTGAGTCGGGAACAATTACACAAGATTGTACATGATACTGATATCCAGAGTATTGAGGAATGTTACATGGAAACAAACTGTAGTGAATTCAACCTCGGAGATGTTCTTGACGTTGTAACGAATCAAACCATGATTTTGAGCCGAAAGCGTGAGGTGAAGATCATTTGTGAATCACCTGCGGACGTGTCATCTCTGCACTTATATGGAGATAACTTGAGGCTACAGCAAGTGCTCTCTGAGTTCTTGACGAACACGCTTCTCTTCACTTGCAAAGAATCGTCCGTCATCTTTAAAGCAACTCCGAGGAAGGAGCGCATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGGATCACCCATCCCACTCCGGGAATTCCTGCGCACTTAATCCAAGAGATGTTCGACGACAACAACGATAGCTCAAAGGAAGGTCTTGGCTTATACATAAGCCAGAAGCTTGTGAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGCCGAAACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTAGAGCATGTTGCTAGATGA 3357 42.09 MSSTSNKTVCSKTSFDRSKHGAHVVAQTPIDAKLHVDFEGSERFFDYSASVDFNAACSTSNVHTSTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILVHCRTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLAQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQAQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVKCDGAALYFRKKFWLLGVTPTEAQIRNIADWLLKDHSGSTGLSTDSLIEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPSDEDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEIEEECKMITTVPPVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLAIQEAIGMPLVDCLVNDSVKVVKKMLSLAIQGIEEKNIEIKLKTFGTAVQNGPVILEVNSCCSRDLNNNVVGVSLIGQDVTKQKLVMNQYTQIQGDYTGIMRNPSALIPPIFMADGEGRCLEWNDAMEKLSGFRRVEMTNRMLLGEVFTLENFGCCVKDHTLTKLRILLHRVISGQDTEKFLFRFCDREGNYVESLLTASKRTDAEGNITGVFFFLHVASPELQYALEMQRISEQATAENLHKLAYLRQEIRKPLDGITFMQNLMSSSDLSIEQKQLIKLNTLSREQLHKIVHDTDIQSIEECYMETNCSEFNLGDVLDVVTNQTMILSRKREVKIICESPADVSSLHLYGDNLRLQQVLSEFLTNTLLFTCKESSVIFKATPRKERIGKGIHIVHLELRITHPTPGIPAHLIQEMFDDNNDSSKEGLGLYISQKLVKIMNGTVQYLREAETSSFIILIEFPLVEHVAR 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4007171 4013283 - PI0018390.1 Cmetu01g1663 346937

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1663 1118 CDD PAS 756 866 IPR000014 -
Cmetu01g1663 1118 Pfam PAS fold 70 185 IPR013654 GO:0006355
Cmetu01g1663 1118 Gene3D PAS domain 73 321 - -
Cmetu01g1663 1118 Gene3D - 402 575 IPR043150 -
Cmetu01g1663 1118 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 387 IPR016132 -
Cmetu01g1663 1118 PANTHER OS08G0260000 PROTEIN 66 950 - -
Cmetu01g1663 1118 SUPERFAMILY GAF domain-like 198 394 - -
Cmetu01g1663 1118 NCBIfam PAS domain S-box protein 619 733 IPR000014 -
Cmetu01g1663 1118 NCBIfam PAS domain S-box protein 759 865 IPR000014 -
Cmetu01g1663 1118 FunFam Phytochrome 953 1112 - -
Cmetu01g1663 1118 FunFam Phytochrome 402 534 - -
Cmetu01g1663 1118 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Cmetu01g1663 1118 PRINTS Phytochrome signature 427 447 IPR001294 GO:0006355|GO:0009584
Cmetu01g1663 1118 PRINTS Phytochrome signature 545 563 IPR001294 GO:0006355|GO:0009584
Cmetu01g1663 1118 PRINTS Phytochrome signature 512 531 IPR001294 GO:0006355|GO:0009584
Cmetu01g1663 1118 PRINTS Phytochrome signature 727 747 IPR001294 GO:0006355|GO:0009584
Cmetu01g1663 1118 PRINTS Phytochrome signature 634 649 IPR001294 GO:0006355|GO:0009584
Cmetu01g1663 1118 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Cmetu01g1663 1118 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Cmetu01g1663 1118 PRINTS Phytochrome signature 615 631 IPR001294 GO:0006355|GO:0009584
Cmetu01g1663 1118 PRINTS Phytochrome signature 707 724 IPR001294 GO:0006355|GO:0009584
Cmetu01g1663 1118 ProSiteProfiles PAS repeat profile. 745 797 IPR000014 -
Cmetu01g1663 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 187 IPR035965 -
Cmetu01g1663 1118 FunFam Phytochrome 608 739 - -
Cmetu01g1663 1118 Gene3D - 199 558 IPR029016 -
Cmetu01g1663 1118 Pfam PAS fold 615 729 IPR013767 GO:0006355
Cmetu01g1663 1118 Pfam PAS fold 755 866 IPR013767 GO:0006355
Cmetu01g1663 1118 CDD HATPase_Phy-like 999 1110 IPR044767 -
Cmetu01g1663 1118 Gene3D - 933 1106 IPR036890 -
Cmetu01g1663 1118 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Cmetu01g1663 1118 Pfam GAF domain 219 397 IPR003018 GO:0005515
Cmetu01g1663 1118 Pfam Phytochrome region 410 584 IPR013515 GO:0006355|GO:0009584
Cmetu01g1663 1118 SMART gaf_1 218 407 IPR003018 GO:0005515
Cmetu01g1663 1118 SMART pas_2 744 814 IPR000014 -
Cmetu01g1663 1118 SMART pas_2 614 680 IPR000014 -
Cmetu01g1663 1118 Gene3D PAS domain 600 743 - -
Cmetu01g1663 1118 CDD PAS 623 729 IPR000014 -
Cmetu01g1663 1118 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1000 1106 IPR003594 -
Cmetu01g1663 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 621 732 IPR035965 -
Cmetu01g1663 1118 Gene3D PAS domain 758 869 - -
Cmetu01g1663 1118 PIRSF Phytochrome_conventional 1 1118 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cmetu01g1663 1118 ProSiteProfiles PAS repeat profile. 612 682 IPR000014 -
Cmetu01g1663 1118 ProSiteProfiles Histidine kinase domain profile. 895 1114 IPR005467 -
Cmetu01g1663 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 759 863 IPR035965 -
Cmetu01g1663 1118 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 957 1108 IPR036890 -
Cmetu01g1663 1118 SMART HKATPase_4 1000 1114 IPR003594 -
Cmetu01g1663 1118 SUPERFAMILY GAF domain-like 405 585 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1663 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1663 Cmetu-Chr1:4007171 Cmetu06g1585 Cmetu-Chr6:5450876 0.00E+00 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g703 Blo02g00140 Blo15g00444 . . . . . . . Cmo19g00869 . . . . Sed05g2128 Cpe15g00685 . Bhi05g01475 Tan02g0490 Cmetu01g1663 Lac12g0396 . . . Cla02g00291 Cam02g0302 Cec02g0302 Cco02g0306 Clacu02g0294 Cmu02g0290 Cre02g0625 . . Cone8ag1368 Cone12ag1314 . Csa07g00253 . Cme01g00552 . . . . . . . . . . . . Cma19g00854 . Car19g00664 . . . . . . . . . . . . . . . . Lsi11g01345 . Chy01g00529 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0019 . 5 1168 Histidine Kinase Gene Family AT2G17820 64.1 0.0e+00 1410.6
Cmetu09g0510 . 103 1066 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1330.5
Cmetu10g1485 . 4 847 Histidine Kinase Gene Family AT2G01830 71.1 0.0e+00 1135.6
Cmetu11g2204 . 304 1259 Histidine Kinase Gene Family AT2G01830 52.0 1.4e-269 926.4
Cmetu11g0071 . 1 936 Histidine Kinase Gene Family AT2G01830 50.9 1.5e-258 889.8
Cmetu07g2088 . 1 898 Histidine Kinase Gene Family AT5G10720 56.5 2.0e-251 865.9
Cmetu03g2257 . 1 1078 Histidine Kinase Gene Family AT1G09570 76.2 0.0e+00 1718.7
Cmetu03g0436 . 3 1146 Histidine Kinase Gene Family AT1G09570 71.4 0.0e+00 1631.3
Cmetu01g1663 . 17 1109 Histidine Kinase Gene Family AT1G09570 55.2 0.0e+00 1214.5
Cmetu06g1585 . 34 1098 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1156.4
Cmetu06g1585 . 13 1039 Histidine Kinase Gene Family AT2G18790 77.2 0.0e+00 1620.9
Cmetu12g0178 . 32 1054 Histidine Kinase Gene Family AT2G18790 59.9 0.0e+00 1241.5
Cmetu01g1663 . 25 1066 Histidine Kinase Gene Family AT2G18790 52.4 0.0e+00 1081.6
Cmetu03g0436 . 22 1077 Histidine Kinase Gene Family AT2G18790 51.0 3.8e-308 1054.7
Cmetu03g2257 . 21 1012 Histidine Kinase Gene Family AT2G18790 50.2 5.1e-289 991.1
Cmetu01g1663 . 17 1113 Histidine Kinase Gene Family AT5G35840 62.4 0.0e+00 1382.9
Cmetu06g1585 . 21 1100 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1111.3
Cmetu06g1585 . 3 1100 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1664.8
Cmetu12g0178 . 39 1116 Histidine Kinase Gene Family AT4G16250 58.2 0.0e+00 1283.5
Cmetu01g1663 . 25 1112 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1120.9
Cmetu03g2257 . 8 1073 Histidine Kinase Gene Family AT4G16250 50.1 8.1e-306 1047.0
Cmetu12g0178 . 16 1117 Histidine Kinase Gene Family AT4G18130 63.3 0.0e+00 1383.6
Cmetu06g1585 . 38 1098 Histidine Kinase Gene Family AT4G18130 57.9 0.0e+00 1238.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40