Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1679 ATGGGTTGGAATAGATCTTCGAGGAATGGCAATTTGAGGATCTGGGTGCAGGTTTTAGTCGGATTCGTGGCCTGTGCAGCCCAAGTTCTTTGGGAATTACGAATCCAGGGGATTTCAATCTCTATGGCTGATTGTACAAATTATCTTTTCTTGATAGTTTCTGCTATTAGTAGCTTTCATACTGCACTCGGACTCCCCAGTCTTCCTGGATGGGGCATCGGGCAAGACCCATGCGGAGACGCATGGCAGGGTGTTGTTTGTAATGATTCGAGTATCATTAGAATAATCATTAATGCTGCTAATTTGGGAGGTGAACTTGGTGACAACTTGGGATTGTTTTCTTCAATCCAAACAATTGATCTAAGCAACAATCATATAGGGGGAAGTATACCATCCAGTTTACCTGTTACCCTGCAGAATTTTTTTCTTTCAGCGAATCAGTTCACAGGAAGCATTCCGAGTTCATTATCATCTTTGACTCAACTGACAGCAATGTCGTTGAATGATAACAAATTAAGCGGACAAATACCGGATTCCTTTCAAGCCATTTCTCAATTGGTCAATTTGGACTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGTAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAACAATCAGCTGTCAGGAACCCTTGATGTTCTACAAGACCTTCCACTGAAAGACTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGGTGCTGAGTATCCCTAATTTTAGAAAGGATGGAAACCCATTTAATTCTTCCGTTTCTCCGACATCTCCTCCTGTATCTCCTTCTCCACCATCAAAGCCAGCACCAGCACCGCCCGTTTCTGGAGCACCACCAGTTTCTGGAGCACCGCCATCTTCTCAACAAAGACCTAAGAAACAGGCTGATGGACCATCGGCATCTGAGGACTCCAGTTCTGGAAAAAATAAGAAAAACACTAAAAGGGTTGTTTTAATAACAATTGCAGTGGTTTTGTCTTTCATAATTTTGGTCTTGGCATGCGTGCTCTTTATGCCAAGGTGCAGAAGAAGAAGAAGTGATAGTGTTTCGAAGCGACATCAGATAGGTGCTTATAGGGGTGAGAGAGAGAATGTTGGAAATCAGGGAGCCATGCCCCAAACAAATGATCAGATACCTAAAGTAGTTCCAAAAGAGCCAGTTGTAAGGGTGAAGCAGGAAACTCAAACAGAGGTTCAGAAGGTTCCAAAAGATCATGTAGAGAGAGAGAAAAACATGCCAAGAATGAGCCCTATTCCAAAGAAGGATCATCATGAAGTAGATATGAGTGCACTTGATGTCTATCTAATGCCTCCCCCTCCTCCTCCCCCTCCCCCACCACCTCCTCCTCCCCCTCCCCCTCCTGTTGAAGAGGTCACTGCCCCTCTCACTAAAAATAGAATTACCTCAACTTTTGCGAAATCTTTTACCATTGCGTCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTCTAGGAGAAGGAATGCTGGGCAATGTTTATAGGGCACACCTTCCCAATGGGAAGTTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCAGCAAAAGGATGATGAGTTTCTTGAGCTAGTCAATAATATTGATAGAATCCGGCATGCTAATGTGGTTGAGCTCAGTGGTTACTGCGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGCAGTGGTGGAACATTGCAGGATGCACTGCACTCAGACGAAGAGTTCAGAAAGAAGCTTTCATGGAATGCCCGCATTAGAATGGCCCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGTCAGCCACCTGTTATTCATAGGAACTTCAAGTCTGCGAATGTCCTACTGGATGATGATCTTTCAGTGCGTCTCTCTGGTCAGCTTCTAACTGCATATGGTTATGGAGCGCCAGAATTTGAATCAGGTGTTTATACACTTGAGAGTGATGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTAACTGGCCGGATGTCTTATGACAGAACAAGGACCCGAGGTGAGCAGTTTCTAGTTAGATGGGCAATTCCGCAGCTTCACGACATAGAGGCATTGACAAGCATGGTTGATCCTTCACTCAATGGTCGATACCCTGCCAAATCCTTATCATACTTTGCCGATATCATATCAAAATGTGTTCAGTCCGAGCCTGAATTCCGGCCACCAATGTCGTCGGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCACAAGGCAGTGGTTCAAGTGAGGATTGA 2325 44.47 MGWNRSSRNGNLRIWVQVLVGFVACAAQVLWELRIQGISISMADCTNYLFLIVSAISSFHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIRIIINAANLGGELGDNLGLFSSIQTIDLSNNHIGGSIPSSLPVTLQNFFLSANQFTGSIPSSLSSLTQLTAMSLNDNKLSGQIPDSFQAISQLVNLDLSNNNLSGPLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKVLSIPNFRKDGNPFNSSVSPTSPPVSPSPPSKPAPAPPVSGAPPVSGAPPSSQQRPKKQADGPSASEDSSSGKNKKNTKRVVLITIAVVLSFIILVLACVLFMPRCRRRRSDSVSKRHQIGAYRGERENVGNQGAMPQTNDQIPKVVPKEPVVRVKQETQTEVQKVPKDHVEREKNMPRMSPIPKKDHHEVDMSALDVYLMPPPPPPPPPPPPPPPPPPVEEVTAPLTKNRITSTFAKSFTIASLQQYTNSFSQENLLGEGMLGNVYRAHLPNGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDEEFRKKLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSANVLLDDDLSVRLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFADIISKCVQSEPEFRPPMSSVVQDLLNMIRREPQGSGSSED 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2845855 2853125 + PI0028554.1 Cmetu01g1679 346953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1679 774 Gene3D Transferase(Phosphotransferase) domain 1 580 771 - -
Cmetu01g1679 774 Pfam Leucine rich repeat 137 196 IPR001611 GO:0005515
Cmetu01g1679 774 MobiDBLite consensus disorder prediction 448 472 - -
Cmetu01g1679 774 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 86 758 - -
Cmetu01g1679 774 Gene3D Ribonuclease Inhibitor 136 180 IPR032675 -
Cmetu01g1679 774 Gene3D Ribonuclease Inhibitor 53 135 IPR032675 -
Cmetu01g1679 774 Pfam Protein tyrosine and serine/threonine kinase 504 758 IPR001245 GO:0004672|GO:0006468
Cmetu01g1679 774 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 52 274 - -
Cmetu01g1679 774 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Cmetu01g1679 774 MobiDBLite consensus disorder prediction 269 294 - -
Cmetu01g1679 774 Gene3D Phosphorylase Kinase; domain 1 470 578 - -
Cmetu01g1679 774 ProSiteProfiles Protein kinase domain profile. 501 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu01g1679 774 MobiDBLite consensus disorder prediction 261 324 - -
Cmetu01g1679 774 SUPERFAMILY Protein kinase-like (PK-like) 481 758 IPR011009 -
Cmetu01g1679 774 SUPERFAMILY L domain-like 67 255 - -
Cmetu01g1679 774 Gene3D Ribonuclease Inhibitor 181 278 IPR032675 -
Cmetu01g1679 774 MobiDBLite consensus disorder prediction 295 320 - -
Cmetu01g1679 774 SUPERFAMILY Formin homology 2 domain (FH2 domain) 457 463 - -
Cmetu01g1679 774 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 469 578 - -
Cmetu01g1679 774 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 579 772 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1679 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1679 Cmetu-Chr1:2845855 Cmetu04g2436 Cmetu-Chr4:2302745 2.90E-134 dispersed
Cmetu01g1679 Cmetu-Chr1:2845855 Cmetu04g1423 Cmetu-Chr4:2256200 4.90E-22 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g1679 . 53 772 Strubbelig Receptor Gene Family AT4G03390 60.4 8.3e-190 661.0
Cmetu04g2436 . 17 731 Strubbelig Receptor Gene Family AT4G03390 53.4 7.4e-154 541.6
Cmetu01g1056 . 378 689 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-90 330.9
Cmetu04g0236 . 3 715 Strubbelig Receptor Gene Family AT5G06820 50.1 3.3e-188 655.6
Cmetu03g1756 . 22 697 Strubbelig Receptor Gene Family AT1G78980 59.3 1.7e-189 659.8
Cmetu04g3017 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.8 1.3e-154 543.9
Cmetu01g1056 . 24 692 Strubbelig Receptor Gene Family AT1G78980 51.3 2.6e-126 449.9
Cmetu03g1756 . 20 675 Strubbelig Receptor Gene Family AT3G13065 51.9 3.7e-141 499.2
Cmetu01g1056 . 28 687 Strubbelig Receptor Gene Family AT3G13065 50.4 4.0e-103 372.9
Cmetu12g0052 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.4e-84 311.2
Cmetu04g0236 . 3 715 Strubbelig Receptor Gene Family AT5G06820 50.1 3.3e-188 655.6
Cmetu01g1679 . 53 772 Strubbelig Receptor Gene Family AT4G03390 60.4 8.3e-190 661.0
Cmetu04g2436 . 17 731 Strubbelig Receptor Gene Family AT4G03390 53.4 7.4e-154 541.6
Cmetu01g1056 . 378 689 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-90 330.9
Cmetu03g1756 . 20 675 Strubbelig Receptor Gene Family AT3G13065 51.9 3.7e-141 499.2
Cmetu01g1056 . 28 687 Strubbelig Receptor Gene Family AT3G13065 50.4 4.0e-103 372.9
Cmetu03g1756 . 22 697 Strubbelig Receptor Gene Family AT1G78980 59.3 1.7e-189 659.8
Cmetu04g3017 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.8 1.3e-154 543.9
Cmetu01g1056 . 24 692 Strubbelig Receptor Gene Family AT1G78980 51.3 2.6e-126 449.9
Cmetu04g3017 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.8 6.3e-216 747.7
Cmetu01g1056 . 1 714 Strubbelig Receptor Gene Family AT1G53730 61.2 9.4e-188 654.1
Cmetu03g1756 . 15 683 Strubbelig Receptor Gene Family AT1G53730 50.6 4.4e-153 538.9
Cmetu04g3017 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 2.5e-190 662.5
Cmetu01g1056 . 6 704 Strubbelig Receptor Gene Family AT3G14350 56.4 4.5e-171 598.6
Cmetu12g0052 . 138 711 Strubbelig Receptor Gene Family AT4G22130 61.9 1.0e-181 633.6
Cmetu04g3017 . 404 726 Strubbelig Receptor Gene Family AT4G22130 64.0 1.1e-119 427.6
Cmetu01g1056 . 391 706 Strubbelig Receptor Gene Family AT4G22130 64.8 3.4e-116 416.0
Cmetu01g1679 . 486 764 Strubbelig Receptor Gene Family AT4G22130 59.8 1.6e-102 370.5
Cmetu03g1756 . 351 697 Strubbelig Receptor Gene Family AT4G22130 53.4 2.4e-98 356.7
Cmetu04g2436 . 464 731 Strubbelig Receptor Gene Family AT4G22130 60.4 6.4e-91 332.0
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70176 PF07714 PK_Tyr_Ser-Thr 1.60E-32 CL0016 Cmetu PK