Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1772 ATGGCAACCAAAAGCAAGATTTTGATTGTTGGAGGGAGTGGCTATGTTGGTAAGTTTATGGTGGAAGCGAGTGCCAAGGCTGGCCATCCAACCTATGTTCTTATTAGACATTCCACTCTCTCCAACCATTCCAAGTCTCATATTATCAACAAATTCAAGACCTTGGGGGTCCAATTTTTCTTTGGTGATTTATATGATCGTGAGAGTTTAGTTAAGGCAATTAAAGAAGTGGATGTGGTGATATCGACCGTAGGGCTTGATCAATTAGCTGATCAATATACACTCATCTCTGCCATCAAAGAAGTTGGCCATATTAAGAGATTCTTGCCATCAGAATTTGGGAATGATGTGGATCATGTACGTGGTGTTGAGCCAGCAAAATCAGCTTATGCTGCAAAGGCTAAAATTCGTAGAGCTTTGGAGGGTTCAGGGGTTCCTTATACCATTGTTTCTTCTAATTTCTTTGCTGATTGGTTCCTCTCAAGTTTGGCTCAACCTCAACCTTCTACTCCACCTTGTCCACCTAAAGATCGAGTTTTTATCCTTGGAGATGGAAATCCCAAAGCAATTTTCAACAAGGAAGAAGACATTGGGAGTTACACAATTAGAACTGTGGATGATCCAAGAACTTTAAACAAAATCCTTTATGTTAGACCTCCTAAAAATATTTACTCCTTCAATGATCTTGTCTCTCTTTGGGAGAATAAAATTGGCAAAACCCTCCAGAAGATCTATATTCCAGAGGCTCAAGTGCTCAAGAACATTTCAGAGGCTGAATATCCCCTAAACATGAGGCTATCACTTTATCATTCGGTATTTGTGAAGGGAGATCATACCTATTTTGATATTGATCCATCAATTGGAGTGGAAGCCACAGAATTATATCCAGATATTAAATATACAACTGTTGATCAATTTCTCAATAAGTTTGTTTGA 936 38.78 MATKSKILIVGGSGYVGKFMVEASAKAGHPTYVLIRHSTLSNHSKSHIINKFKTLGVQFFFGDLYDRESLVKAIKEVDVVISTVGLDQLADQYTLISAIKEVGHIKRFLPSEFGNDVDHVRGVEPAKSAYAAKAKIRRALEGSGVPYTIVSSNFFADWFLSSLAQPQPSTPPCPPKDRVFILGDGNPKAIFNKEEDIGSYTIRTVDDPRTLNKILYVRPPKNIYSFNDLVSLWENKIGKTLQKIYIPEAQVLKNISEAEYPLNMRLSLYHSVFVKGDHTYFDIDPSIGVEATELYPDIKYTTVDQFLNKFV 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5985505 5995807 - PI0021289.2 Cmetu01g1772 347046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1772 311 Gene3D - 154 306 - -
Cmetu01g1772 311 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 282 IPR036291 -
Cmetu01g1772 311 Gene3D - 6 297 - -
Cmetu01g1772 311 PANTHER PINORESINOL REDUCTASE-RELATED 3 311 - -
Cmetu01g1772 311 CDD PCBER_SDR_a 6 306 IPR045312 GO:0016491
Cmetu01g1772 311 Pfam NmrA-like family 7 258 IPR008030 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1772 K23050 - - csv:101209637 562.762
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1772 Cmetu-Chr1:5985505 Cmetu11g0943 Cmetu-Chr11:27507016 1.40E-116 dispersed
Cmetu01g1021 Cmetu-Chr1:5974925 Cmetu01g1772 Cmetu-Chr1:5985505 2.30E-119 tandem
Cmetu01g1772 Cmetu-Chr1:5985505 Cmetu01g0437 Cmetu-Chr1:6003752 1.50E-81 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g367 . . . . . . . . . . Cma02g00392 Cma20g00844 Car02g00255 Car20g00731 . . . Bhi05g01245 Tan02g0784 Cmetu01g1772 . . . . . . . . . . . . . . . Lsi10g00378 . . . . . . . . . . . Sed01g0298 Cmo02g00399 Cmo20g00855 . . . . . . Bhi10g01996 Tan05g1294 Cmetu11g1946 . . . . . . . . . . . . Csa02g01267 . Cme11g00123
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234