Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1870 ATGGATCGGAATTTCTTCTTATTCCCCGTGATTGTCGCCGCCACCGCCACCTCCACCCTCTGCTCATCAAAATCTTTAACCTCACCACATTCTGTTGAACATGACGGCGATCCGTTAATTCGTCAAGTCGTTGAAGACGACGGCGATTTCAATCATCACCCTCTTGGAGCAGAGCACCATTTTTTGCTCTTCAAGCGAAGGTTCGGGAAATCGTACGCCACTGAGGAAGAACACGATCGTAGGTTCAAGATCTTCAAGGCTAATATGCGACGAGCAGAACGCCATCAATCATTTGATCCCTCTGCCATTCATGGCGTCACTCAGTTTGCCGATTTGACCCCTTTTGAGTTTCGTAAGGAATTTCTAGGGCTCCGAGGTCATCGCCTCCGGCTTCCTGTTGATACGAATGCGGCTCCGATTCTTCCTACGGAGAATCTTCCGATTGATTTTGATTGGCGAGAACGTGGTGCTGTAACAAGTGTGAAAAATCAGGGATCTTGCGGATCCTGCTGGAGTTTTAGTACAACCGGTGCCCTTGAAGGTGCTAACTTCCTTGCCACAGGGAAACTTGTTAGCTTAAGTGAACAGCAGCTTGTAGATTGTGATCACGAGTGTGACCCAGAGGAAGAAGATTCATGTGATTCGGGTTGCAATGGTGGTCTAATGAATAGTGCATTTGAATACACATTAAAAGCTGGAGGTTTAATGAAGGAACAAGATTATCCCTACACCGGAACTGATCATAGTACATGCAACTTTGATAAATCCAAGATTGCTGCCTCTATTGCCAATTTTAGTGTTGTTAATTCACTTGATGAAGATCAAATTGCTGCCAATCTAGTCAAAAATGGCCCACTTGCAATTGCTATAAATGCAGTGTTTATGCAAACATATATAGGTGGAGTTTCTTGTCCATTCATATGTTCAAAGAGATTGGATCATGGAGTCTTGTTGGTGGGTTATGGCTCAGCTGGCTATGCTCCTATTAGAATGAAAGATAAAGATTATTGGATTATAAAAAATTCGTGGGGCGAAAACTGGGGAGAAAATGGATATTATAAGATCTGTAGAGGAAGGAATATTTGTGGAGTTGATTCTTTGGTATCAACTGTTGCTGCTGTTCATATTCACCATACTTCTTCCACTGCATCAGAAGCAAGAGCTCAGTAG 1170 43.42 MDRNFFLFPVIVAATATSTLCSSKSLTSPHSVEHDGDPLIRQVVEDDGDFNHHPLGAEHHFLLFKRRFGKSYATEEEHDRRFKIFKANMRRAERHQSFDPSAIHGVTQFADLTPFEFRKEFLGLRGHRLRLPVDTNAAPILPTENLPIDFDWRERGAVTSVKNQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEEDSCDSGCNGGLMNSAFEYTLKAGGLMKEQDYPYTGTDHSTCNFDKSKIAASIANFSVVNSLDEDQIAANLVKNGPLAIAINAVFMQTYIGGVSCPFICSKRLDHGVLLVGYGSAGYAPIRMKDKDYWIIKNSWGENWGENGYYKICRGRNICGVDSLVSTVAAVHIHHTSSTASEARAQ 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5873698 5875629 - PI0017694.1 Cmetu01g1870 347144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1870 389 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 336 355 IPR025661 -
Cmetu01g1870 389 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 58 364 IPR013128 GO:0008234
Cmetu01g1870 389 CDD Peptidase_C1A 147 371 IPR039417 -
Cmetu01g1870 389 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 164 175 IPR000169 -
Cmetu01g1870 389 SMART Inhibitor_I29_2 61 117 IPR013201 -
Cmetu01g1870 389 Gene3D Cysteine proteinases 31 372 - -
Cmetu01g1870 389 SMART pept_c1 146 372 IPR000668 GO:0006508|GO:0008234
Cmetu01g1870 389 Pfam Cathepsin propeptide inhibitor domain (I29) 61 117 IPR013201 -
Cmetu01g1870 389 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 312 322 IPR025660 -
Cmetu01g1870 389 SUPERFAMILY Cysteine proteinases 59 372 IPR038765 -
Cmetu01g1870 389 PRINTS Papain cysteine protease (C1) family signature 314 324 IPR000668 GO:0006508|GO:0008234
Cmetu01g1870 389 PRINTS Papain cysteine protease (C1) family signature 336 342 IPR000668 GO:0006508|GO:0008234
Cmetu01g1870 389 PRINTS Papain cysteine protease (C1) family signature 164 179 IPR000668 GO:0006508|GO:0008234
Cmetu01g1870 389 FunFam Cysteine protease RD19A 38 372 - -
Cmetu01g1870 389 Pfam Papain family cysteine protease 146 370 IPR000668 GO:0006508|GO:0008234
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1870 K01373 - - csv:101217613 713.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1870 Cmetu-Chr1:5873698 Cmetu08g0588 Cmetu-Chr8:19814000 1.80E-55 dispersed
Cmetu04g0140 Cmetu-Chr4:10219807 Cmetu01g1870 Cmetu-Chr1:5873698 1.90E-20 transposed
Cmetu10g0162 Cmetu-Chr10:21498389 Cmetu01g1870 Cmetu-Chr1:5873698 7.80E-104 transposed
Cmetu01g1870 Cmetu-Chr1:5873698 Cmetu11g2272 Cmetu-Chr11:27816163 5.00E-167 wgd
Cmetu01g1870 Cmetu-Chr1:5873698 Cmetu03g1205 Cmetu-Chr3:2127692 2.00E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102