Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1872 ATGGCCGCCTCCTTTTCTTTCTCTACTCCTCAAACTCATCCCAACCGCATTTCTCCTTATTCTAACCTCAATTCCCTACGCCTTTTCTCTCCTCCTTCCAATCTCCGTTTCAATCGCCGTCTTAATCCTCGAAATGCTTCTCTCACTCTCAACATCCAATGCATCAGTCAACCTAAAGCTGAGGTGGTTACTAAAGACTCATGGAACAAAATGATTCTAGAGAGCGGAACCCCTGTCCTGGTTGAATTTTATGCTAGTTGGTGTGGACCATGTAGAATGGTGCATCGGGTCATTGACGAGTTAGCTGCTGAATATGAGGGGAAGCTCAAATGCTTTGTGCTCAACACTGACACCGATTTACAAATAGCTGAAGACTACGAAATTAAGGCTGTTCCTGTGGTTATGCTGTTCAAGAATGGGGAGAAATGTGATAGCGTCATCGGGACAATGCCAAAAGATTTCTATATTGCTGCCGTTGAAAGGGTCCTGAAGCAGTAG 498 44.78 MAASFSFSTPQTHPNRISPYSNLNSLRLFSPPSNLRFNRRLNPRNASLTLNIQCISQPKAEVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDLQIAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 516376 518968 - PI0016310.1 Cmetu01g1872 347146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1872 165 ProSiteProfiles Thioredoxin domain profile. 1 165 IPR013766 -
Cmetu01g1872 165 Pfam Thioredoxin 61 157 IPR013766 -
Cmetu01g1872 165 PANTHER GEO12009P1 54 164 - -
Cmetu01g1872 165 SUPERFAMILY Thioredoxin-like 53 163 IPR036249 -
Cmetu01g1872 165 Gene3D Glutaredoxin 61 165 - -
Cmetu01g1872 165 FunFam Thioredoxin 55 165 - -
Cmetu01g1872 165 CDD TRX_family 66 160 - -
Cmetu01g1872 165 ProSitePatterns Thioredoxin family active site. 80 98 IPR017937 -
Cmetu01g1872 165 NCBIfam thioredoxin 64 160 IPR005746 GO:0015035
Cmetu01g1872 165 PRINTS Thioredoxin family signature 127 138 - -
Cmetu01g1872 165 PRINTS Thioredoxin family signature 79 87 - -
Cmetu01g1872 165 PRINTS Thioredoxin family signature 87 96 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1872 K03671 - - csv:101204685 314.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1872 Cmetu-Chr1:516376 Cmetu03g0770 Cmetu-Chr3:10284876 7.30E-27 dispersed
Cmetu01g1872 Cmetu-Chr1:516376 Cmetu06g2351 Cmetu-Chr6:24090376 1.10E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1199 Blo01g01324 Blo12g01109 . Bda03g00029 . Bpe04g00019 . . Cmo04g02534 Cmo15g00640 . . . . Sed11g1319 . Cpe13g00660 Bhi04g01828 Tan11g1203 Cmetu01g1872 . Hepe02g2753 . Lcy10g1305 Cla08g00654 Cam08g1084 Cec08g0670 Cco08g0779 Clacu08g0788 . Cre08g0593 . . Cone17ag0803 Cone20ag0407 . . . Cme03g00422 . . . . . . . . . . . . . Car04g02331 Car15g00581 Cpe01g02094 . . . . . . . . . . . . . . . Lsi08g00514 . Chy03g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008931 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 1 3 1 1 1 1 1 1 1 32