Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1881 ATGCAGCGCCGCCGGTGTTTGTCGTCGAGAGCCATTTCGGACACAGAAAGCGAGTCCGATCAAGAAATGATGAAGTGCTTGTCGTGTCTGGAGGAATACCCATCACGCGAGGCCGGAACCTGCAAGGAGTGCTATGATGAAGCTAATGAGACTGAGGAAGAGCTCAAGCGTGAGATCGAAGACTTGAAAGCCAAGGTCGCTTTCCTCAGGTTTTGGTCCCCTCTTGATCATCTACATAACAGGTCGAATACTCCATGCTTTACGGATGTCGTTTTGATCGCCTCCAGCGATGGACCTGAGGGATACGCCGTACCTCTTCCCGCTCATAAAGCTGTCTTGGTGAGTCGCTCCCCAGTTTTCAGAGCTATGCTTGAGAATGAAATGGAAGAAAGTCGTAGTGGTACCATAAAGATCAGCGATGTGTCGTTTGATGCTCTCCGTGCCTTTGTTAATTATTTGTACACGGCAGAAGCTTGTCTTGATGAGCAAATGGCTTATGACCTTCTAGTTTTGGCTGAGAAGTACGAAGTGAAGCATTTGAAGGCACATTGCGAGAAGTTCCTAATATCAAAACTGAACTGGGACAACTCAATCATGAACTACGTATTTGCACACCAGCACAATGGCGTGCATATGATCAATGCAGCTTTGTCAATGATTATCGAAAACATGGACAAGCTTACCAAAAGGGAGGAGTATATGGAGCTCGTTGAGAAGGATCCACGGCTTGTCGTGGAAATCTATGAAGCTTACATGTCTAAACAGGTAAATACTGCTGCTTGTAAGGATTGTTCTGTGAAATAA 804 46.02 MQRRRCLSSRAISDTESESDQEMMKCLSCLEEYPSREAGTCKECYDEANETEEELKREIEDLKAKVAFLRFWSPLDHLHNRSNTPCFTDVVLIASSDGPEGYAVPLPAHKAVLVSRSPVFRAMLENEMEESRSGTIKISDVSFDALRAFVNYLYTAEACLDEQMAYDLLVLAEKYEVKHLKAHCEKFLISKLNWDNSIMNYVFAHQHNGVHMINAALSMIIENMDKLTKREEYMELVEKDPRLVVEIYEAYMSKQVNTAACKDCSVK 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8970077 8982421 + PI0023409.1 Cmetu01g1881 347155

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1881 267 SMART BTB_4 88 192 IPR000210 GO:0005515
Cmetu01g1881 267 Coils Coil 41 65 - -
Cmetu01g1881 267 CDD BTB_POZ_ZBTB_KLHL-like 87 175 - -
Cmetu01g1881 267 PANTHER SPECKLE-TYPE POZ PROTEIN 15 257 - -
Cmetu01g1881 267 Gene3D Potassium Channel Kv1.1; Chain A 72 192 IPR011333 -
Cmetu01g1881 267 SUPERFAMILY POZ domain 74 190 IPR011333 -
Cmetu01g1881 267 Gene3D - 193 267 - -
Cmetu01g1881 267 ProSiteProfiles BTB domain profile. 88 162 IPR000210 GO:0005515
Cmetu01g1881 267 Pfam BTB/POZ domain 84 191 IPR000210 GO:0005515
Cmetu01g1881 267 FunFam BTB/POZ domain-containing protein 194 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1881 K10523 - - csv:101206278 523.087
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g259 . . . . . . . . Cmo04g02476 . Cma01g01052 . Car01g00927 . . . . Bhi04g01910 Tan11g1271 . . Hepe02g2263 . . Cla08g00595 . Cec08g0599 Cco08g0709 Clacu08g0719 . Cre08g0529 Cone4ag1411 Cone7ag1527 . . . . . Cme03g00549 . Blo18g00183 . . Bpe02g01644 . Bma01g00813 . Sed07g2802 Cmo01g01092 . . . Car04g02293 . Cpe01g02054 Cpe02g00843 Bhi09g01832 Tan01g3241 Cmetu01g1881 . . Mch11g1322 . . . . . . . . Lsi08g00438 . Chy03g00794 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008496 1 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 0 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7325 PF00651 BTB 5.10E-25 CL0033 Cmetu TR