Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g1966 ATGCCATTGCCCAAGCTTCTTCTCCCCTTCATGATGATGGGGTTAATAACCCTAGCCCCCATCACCCTTGCTCAAAACTCCCACCAAGACTTCGTCAATGCCCACAATGCCGCCCGAGCAAAGGTTGGCGTCGGGCCAGTCTCTTGGAACTACACCTTGGCTGCCTATGCCCAAACTTATGCCAACAAGAAGATTGGTACTTGTGAGATGCAACATTCGTATGGTCCTTATGGTGAGAATTTAGCCGAAGGGTATGGCGAGATGACGGCAGTGGAGGCTGTGAACTTCTGGGTGAGTGAAAAGAAATACTATGACCATCATTCCAATCGGTGCGTCGGGGACGAGTGTCGCCATTATACACAAGTAGTGTGGCGGGGCACCAAGCATGTGGGTTGTGCTAGAGTGAAATGTCACAACAATTGGATCTTTGTGATATGCAACTATGATCCTCCTGGCAATTATGTAGGCCAATTTCCTTACTGA 483 49.07 MPLPKLLLPFMMMGLITLAPITLAQNSHQDFVNAHNAARAKVGVGPVSWNYTLAAYAQTYANKKIGTCEMQHSYGPYGENLAEGYGEMTAVEAVNFWVSEKKYYDHHSNRCVGDECRHYTQVVWRGTKHVGCARVKCHNNWIFVICNYDPPGNYVGQFPY 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1205901 1206383 - PI0025352.1 Cmetu01g1966 347240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g1966 160 CDD CAP_PR-1 29 160 - -
Cmetu01g1966 160 ProSitePatterns CRISP family signature 2. 143 154 IPR018244 GO:0005576
Cmetu01g1966 160 PANTHER CYSTEINE-RICH SECRETORY PROTEIN-RELATED 29 158 IPR001283 -
Cmetu01g1966 160 Pfam Cysteine-rich secretory protein family 32 148 IPR014044 -
Cmetu01g1966 160 SUPERFAMILY PR-1-like 19 160 IPR035940 -
Cmetu01g1966 160 PRINTS Allergen V5/Tpx-1 family signature 93 106 IPR001283 -
Cmetu01g1966 160 PRINTS Allergen V5/Tpx-1 family signature 116 132 IPR001283 -
Cmetu01g1966 160 PRINTS Allergen V5/Tpx-1 family signature 143 156 IPR001283 -
Cmetu01g1966 160 PRINTS Allergen V5/Tpx-1 family signature 47 65 IPR001283 -
Cmetu01g1966 160 FunFam Putative pathogenesis-related protein 1 25 160 - -
Cmetu01g1966 160 SMART SCP_3 26 156 IPR014044 -
Cmetu01g1966 160 ProSitePatterns CRISP family signature 1. 117 127 IPR018244 GO:0005576
Cmetu01g1966 160 Gene3D CAP 25 160 IPR035940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g1966 K13449 - - csv:101211073 326.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0769 Cmetu-Chr1:1193288 Cmetu01g1966 Cmetu-Chr1:1205901 4.60E-50 dispersed
Cmetu01g1933 Cmetu-Chr1:1196254 Cmetu01g1966 Cmetu-Chr1:1205901 1.50E-07 dispersed
Cmetu01g1966 Cmetu-Chr1:1205901 Cmetu01g2111 Cmetu-Chr1:1198620 9.40E-64 dispersed
Cmetu01g2662 Cmetu-Chr1:1203812 Cmetu01g1966 Cmetu-Chr1:1205901 1.10E-54 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g805 Blo02g00912 Blo03g00050 . . . . Bma05g00634 Bma12g00314 Cmo19g00538 Cmo11g01434 . . . . Sed06g0830 . Cpe15g00418 Bhi05g00999 Tan02g1068 Cmetu01g1966 Lac12g0134 . . . Cla02g00718 Cam02g0764 Cec02g0762 Cco02g0790 Clacu02g0757 Cmu02g0752 Cre02g1067 . . . . Lsi03g00628 Csa07g00656 . Cme01g00146 . . . . . Bpe05g00457 . . . Cmo04g00453 . . Cma19g00527 . . . . . . . . . . . . . . . . . . . . Chy01g00155 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002412 6 2 3 5 3 2 0 2 2 2 2 2 2 2 2 2 2 1 1 2 2 4 0 2 1 0 2 2 2 1 61