Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2025 ATGTCTGGTTCTGAGCTTAAGGAGCGGCATGTGGCGGCTATTGAGACTGTCAATTCTCTCAAAGAGCGCTTGAAGCAGAAGAGACATTCGTTGCTCGATACCAATGTAGCTGGGTATGCGAGGTCTTTGGGGAGGACTCCTGTTTCTTTTGGAGCTACGGATCTTGTGTGTTGTAGGACTTTGCAAGGTCATACTGGAAAGGTGTATTCCTTGGATTGGACTTCAGAGAGGAATAGAATTGTTAGTGCATCTCAAGATGGTCGTTTAATAGTGTGGAATGCTCTAACAAGCCAGAAGACTCATGCCATAAAGCTACCTTGTCCTTGGGTCATGACCTCAGGTGGTGGTCTTGACAGTGTTTGTTCCATCTTCAACCTCAACTCTCCAACAGACAGGGACGGGAATCTGCCAGTGACTAGAACGCTTAGCGGGCATAAAGGATATATTTCTTCTTGTCAGTATGTTCCAGATGAGGATACTCGCTTCATTACAGGTTCTGGGGATCAGACGTGTGTCTTATGGGACATTACTACTGGGCTTCGAACCTCTGTTTTTGGAGGTGAGTTTCAATCAGGACATGCAGCAGATGTATCGAGTATATCTATTAGTGGATCCAATTCCAGAACATTTATTTCTGGTTCTTGTGATGCAACTGCTCGCCTGTGGGACACTCGGGTAGCTAGTCGAGCAGTTCAGACGTTCCATGGGCATGAAGGAGATGTTAGTGCAGTGAAGTTCTTTCCAGATGGTAACCGTTACCATCAGCTGCACAATGATAATACCAACTCACACGTAACCTCCATTGCATTCTCTATATCCGGGAGACTTTTGTTTGCTGGATACAAAAATGGTGATTGCTATGTGTGGGACACTTTACTTGCAAAGATGGTTTTGAACTTGGGAAAACTTCAGAACTCACACGAAGGACGAATTACTTGCTTGGGCTTGTCTGCTGATGGAAGTGCTTTATGTACAGGAAGTTGGGATTCAAACCTGAAGATATGGGCATTCGGAGGTCACCGGAAGGTAACTTAA 1035 45.22 MSGSELKERHVAAIETVNSLKERLKQKRHSLLDTNVAGYARSLGRTPVSFGATDLVCCRTLQGHTGKVYSLDWTSERNRIVSASQDGRLIVWNALTSQKTHAIKLPCPWVMTSGGGLDSVCSIFNLNSPTDRDGNLPVTRTLSGHKGYISSCQYVPDEDTRFITGSGDQTCVLWDITTGLRTSVFGGEFQSGHAADVSSISISGSNSRTFISGSCDATARLWDTRVASRAVQTFHGHEGDVSAVKFFPDGNRYHQLHNDNTNSHVTSIAFSISGRLLFAGYKNGDCYVWDTLLAKMVLNLGKLQNSHEGRITCLGLSADGSALCTGSWDSNLKIWAFGGHRKVT 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6384563 6388248 + PI0002322.1 Cmetu01g2025 347299

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2025 344 Pfam Anaphase-promoting complex subunit 4 WD40 domain 249 315 IPR024977 -
Cmetu01g2025 344 Gene3D - 11 336 IPR015943 GO:0005515
Cmetu01g2025 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 344 - -
Cmetu01g2025 344 SUPERFAMILY WD40 repeat-like 54 335 IPR036322 GO:0005515
Cmetu01g2025 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 61 102 IPR001680 GO:0005515
Cmetu01g2025 344 PRINTS G protein beta WD-40 repeat signature 80 94 IPR020472 -
Cmetu01g2025 344 PRINTS G protein beta WD-40 repeat signature 162 176 IPR020472 -
Cmetu01g2025 344 PRINTS G protein beta WD-40 repeat signature 210 224 IPR020472 -
Cmetu01g2025 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 335 IPR001680 GO:0005515
Cmetu01g2025 344 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN BETA G PROTEIN BETA 257 336 IPR016346 GO:0007165
Cmetu01g2025 344 Pfam WD domain, G-beta repeat 139 175 IPR001680 GO:0005515
Cmetu01g2025 344 Pfam WD domain, G-beta repeat 191 223 IPR001680 GO:0005515
Cmetu01g2025 344 Pfam WD domain, G-beta repeat 57 93 IPR001680 GO:0005515
Cmetu01g2025 344 PRINTS Beta G protein (transducin) signature 80 94 IPR001632 -
Cmetu01g2025 344 PRINTS Beta G protein (transducin) signature 99 114 IPR001632 -
Cmetu01g2025 344 PRINTS Beta G protein (transducin) signature 61 77 IPR001632 -
Cmetu01g2025 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 184 IPR001680 GO:0005515
Cmetu01g2025 344 PIRSF GNBP_B 1 338 - -
Cmetu01g2025 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 232 IPR001680 GO:0005515
Cmetu01g2025 344 SMART WD40_4 227 290 IPR001680 GO:0005515
Cmetu01g2025 344 SMART WD40_4 135 175 IPR001680 GO:0005515
Cmetu01g2025 344 SMART WD40_4 296 336 IPR001680 GO:0005515
Cmetu01g2025 344 SMART WD40_4 182 223 IPR001680 GO:0005515
Cmetu01g2025 344 SMART WD40_4 54 93 IPR001680 GO:0005515
Cmetu01g2025 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 190 225 - -
Cmetu01g2025 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Cmetu01g2025 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 61 93 - -
Cmetu01g2025 344 CDD WD40 57 336 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2025 K04536 - - csv:101218729 672.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g584 Blo02g00801 . . Bda08g00926 . . . . Cmo19g00675 . . . . . Sed05g2321 Cpe04g00124 Cpe15g00535 Bhi05g01225 Tan02g0806 Cmetu01g2025 . Hepe02g0513 . . Cla02g00527 Cam02g0545 Cec02g0546 Cco02g0552 Clacu02g0546 Cmu02g0541 Cre02g0872 Cone12ag1148 Cone8ag1196 . . . . . Cme01g01428 Blo04g00509 . . Bda14g00550 Bpe15g00870 . Bma03g00548 . . . . . Cma19g00661 . Car19g00504 . . . . . . . . . . . . . . . . Lsi11g01098 . Chy01g00793 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007608 3 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 36