Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2130 ATGGATCCAAATTCTACTGATTCCCCACTATCACCTACTGTTAATTCCTCGGAAACTAGACCACCAGAAGTACACCCTCAGGCTCCTGTTACCACTGGAATGGATAATGTAGCCCGTGATGCACCATCTAAGTTATCTCCTAGTGGCATAACTTCATGGGCCAAAAACTTGAAAATTTCTCAACCACAGTCAGCTTCACAAGATGGAGCGACTGAAAATGCTGGGAAGTCAGCTTTTGCACGTTTCACCAGTGGCTTGGGTTTGAACTTATCTCCAAAATCTCCTGCACCTAATGATTCCCCAGATGGAAATTCTAAACCTGCCCAACCCAGTTTTGTGGGATCAATCACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGCCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCCATGGGTTTTCCTGCTGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCATATGGAAGAAGTCATAAAGTTCTTTGAAACACATCACAAGGGAAAATATAAAGTATATAATCTTTGTTCTGAGAGGCTATATGATGCTTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCACAACTGTCCCCCAGTTCAACTCATAATATCATTTTGCCAAAGTGCCTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACGGGCTTGATGATTTCCAGTCTTCTTCTATTTTTGAAGTTCTTTCCAACTGCTGAAGAATCCATTGAATACTACAACCAGAGAAGGTGTTTTGATGGCAAAGGTCTGATATTACCAAGTCAGATTAGGTATGTCAAATATTTTGAGCGTATTCTAACATACTTCAATGGGGAAAATCCTCCCAGTCGCAGGTGCGTGCTTAGAGGGTTTCGTCTCCACAGATGCCCATATTGGATCAGGCCTTCCATTACTGTATCTGACCATAATGGTGTTCTGTTCTCCACTAAAGTGCATCCAAGAACCAAGAGTCTCTCGCCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTCGCCTTGCCTGGGGAGCCTGGTCTAGCTGAGTTGTGCGGGGACTTCAAGGTTCATTTCCACGACCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACTGAAAATCGGAAAATGCTGTACACAAATGATCTTGATGGGTTCGACAAGAGGAAACTACCTTCCCCTGGGTTTCAGGTGGAGGTTGTTCTAGTAGATACGTCGCCCAACAACACTACCAAAAAGTCGGATGAAAGCTCAGGCTCCAAGCCTCCTACAGCTGATGGGAGTGAAGTTTCTCAAAACCAAAACAGAAAATCAGGAACTAGTGACAAAGATGATGTATTTTCTGATAGTGAATCAGAAGGCGGTTCTTCAAGGAGCAAGAAGGAGGCAACTTCAGGTTCAGGGGCCGAAGGATCAGCTGTCAATACGACGACTAAATCTCAAGCGAGTACGACTTCATCAGACGATGTTGCGAGTTTAACACATGCAACAAAGCAAGTTTCCCTGGGAGATGGTGGAGCTAAACAGACTGCTACCGCCAGCGAACGAAAAGGCGACGGAGTTGGAAGATCTGATTCTCTCCCAGAAGTTCCAAATTCAGAAAGTGAATTCAAGGCAATGGCTGCCGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTATGAGAGTGAGTAA 1833 43.81 MDPNSTDSPLSPTVNSSETRPPEVHPQAPVTTGMDNVARDAPSKLSPSGITSWAKNLKISQPQSASQDGATENAGKSAFARFTSGLGLNLSPKSPAPNDSPDGNSKPAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLFLKFFPTAEESIEYYNQRRCFDGKGLILPSQIRYVKYFERILTYFNGENPPSRRCVLRGFRLHRCPYWIRPSITVSDHNGVLFSTKVHPRTKSLSPEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNNTTKKSDESSGSKPPTADGSEVSQNQNRKSGTSDKDDVFSDSESEGGSSRSKKEATSGSGAEGSAVNTTTKSQASTTSSDDVASLTHATKQVSLGDGGAKQTATASERKGDGVGRSDSLPEVPNSESEFKAMAADASVFTFGDDEDYESE 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 635708 642111 + PI0004511.1 Cmetu01g2130 347404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2130 610 MobiDBLite consensus disorder prediction 1 74 - -
Cmetu01g2130 610 MobiDBLite consensus disorder prediction 456 591 - -
Cmetu01g2130 610 MobiDBLite consensus disorder prediction 490 510 - -
Cmetu01g2130 610 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
Cmetu01g2130 610 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311|GO:0016791
Cmetu01g2130 610 MobiDBLite consensus disorder prediction 1 22 - -
Cmetu01g2130 610 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 129 326 - -
Cmetu01g2130 610 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 325 IPR029021 -
Cmetu01g2130 610 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
Cmetu01g2130 610 Gene3D - 328 458 - -
Cmetu01g2130 610 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 258 297 IPR000387 GO:0016311|GO:0016791
Cmetu01g2130 610 MobiDBLite consensus disorder prediction 87 114 - -
Cmetu01g2130 610 MobiDBLite consensus disorder prediction 45 73 - -
Cmetu01g2130 610 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 346 454 IPR035892 -
Cmetu01g2130 610 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
Cmetu01g2130 610 MobiDBLite consensus disorder prediction 511 560 - -
Cmetu01g2130 610 MobiDBLite consensus disorder prediction 456 489 - -
Cmetu01g2130 610 MobiDBLite consensus disorder prediction 86 114 - -
Cmetu01g2130 610 CDD PTP_PTEN 154 319 IPR045101 GO:0016791
Cmetu01g2130 610 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 121 559 - -
Cmetu01g2130 610 SMART PTEN_C2_2 328 456 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2130 K01110 - - csv:101222304 1181.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1134 Cmetu-Chr4:8355788 Cmetu01g2130 Cmetu-Chr1:635708 2.50E-39 transposed
Cmetu01g2130 Cmetu-Chr1:635708 Cmetu08g1753 Cmetu-Chr8:19823445 5.00E-198 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu01g1484 . 117 377 Protein tyrosine phosphatase (PTP) family AT1G71860 70.2 1.9e-109 392.9
Cmetu02g0933 . 109 926 Protein tyrosine phosphatase (PTP) family AT5G23720 65.9 1.3e-295 1012.7
Cmetu11g1536 . 20 167 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 1.6e-42 169.5
Cmetu05g0500 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.3e-71 265.4
Cmetu10g0979 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 1.3e-116 416.4
Cmetu10g1171 . 29 282 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 1.2e-109 393.3
Cmetu04g0638 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 2.2e-203 705.3
Cmetu11g0212 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 1.5e-74 276.6
Cmetu05g0487 . 45 241 Protein tyrosine phosphatase (PTP) family AT2G32960 64.2 1.7e-70 263.1
Cmetu02g1280 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.8e-55 211.5
Cmetu06g0363 . 8 304 Protein tyrosine phosphatase (PTP) family AT2G35680 60.5 1.2e-100 363.6
Cmetu05g1458 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.5e-79 293.5
Cmetu06g0363 . 8 183 Protein tyrosine phosphatase (PTP) family AT5G56610 52.3 1.3e-43 173.3
Cmetu11g0212 . 38 214 Protein tyrosine phosphatase (PTP) family AT4G03960 73.4 3.2e-77 285.0
Cmetu05g0487 . 43 241 Protein tyrosine phosphatase (PTP) family AT4G03960 62.3 3.9e-67 251.5
Cmetu02g1280 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.1e-57 219.2
Cmetu02g1280 . 7 200 Protein tyrosine phosphatase (PTP) family AT3G02800 69.4 1.6e-79 292.7
Cmetu11g0212 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 2.7e-55 212.2
Cmetu05g0487 . 39 230 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 4.4e-50 194.9
Cmetu10g0718 . 1 175 Protein tyrosine phosphatase (PTP) family AT3G55270 59.9 1.9e-53 208.0
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu01g2130 . 11 610 Protein tyrosine phosphatase (PTP) family AT3G19420 64.8 3.2e-221 765.0
Cmetu08g1753 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.5e-197 684.5
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu11g0267 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.0 9.1e-72 267.3
Cmetu06g0725 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 7.3e-113 404.1
Cmetu08g1543 . 1 642 Protein tyrosine phosphatase (PTP) family AT3G09100 66.9 2.4e-262 901.7
Cmetu08g1543 . 5 642 Protein tyrosine phosphatase (PTP) family AT5G01290 62.4 2.5e-235 812.0
Cmetu08g1543 . 86 642 Protein tyrosine phosphatase (PTP) family AT5G28210 54.3 2.0e-173 606.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83