Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2184 ATGGAAGCTAGAAAGATGGAAGTGAGTATTGTTTTGGGAATGGTGGGCTTGTTGTTATGGGCAGGGCAAGCAGTGGCTCAATCCTCGAATTGTAACAATGTGTTGATTAGCCTCTCACCTTGCCTTAATTACATCAACGGCAACTCCTCCACCCCGTCCCCAAGTTGCTGCTCGCAACTGACCACTGTCGTCCGCTCCCAACCGCAATGTCTTTGCCAAGTCTTCGATAACGGTGGCGGTGCCTCCGCGCTTGGAGGGCTCAATGTCAACCAAACTCTGGCTCTTGCACTCCCTGGTGCTTGTCGTCTACAAACTCCGCCCATTTCCCGCTGTAACGCGGCTCCTCCTACGAATGATAGTCCTACAGAAACACCAGAATCTTCAAATGAAGAACCTACAGAGGGAGGATCACGAAGAAATGTGCCAACAACTAGAGAAGATGGAACATCAAATGGAACTTCAACAATATTGTTGTCCAAAGCTATGATCTTCATCTTCATTCTTGCTTCAACTTTTGCTCCATTAATCCATTGA 534 47.75 MEARKMEVSIVLGMVGLLLWAGQAVAQSSNCNNVLISLSPCLNYINGNSSTPSPSCCSQLTTVVRSQPQCLCQVFDNGGGASALGGLNVNQTLALALPGACRLQTPPISRCNAAPPTNDSPTETPESSNEEPTEGGSRRNVPTTREDGTSNGTSTILLSKAMIFIFILASTFAPLIH 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7876487 7877714 - PI0018714.1 Cmetu01g2184 347458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2184 177 Pfam Probable lipid transfer 26 111 IPR016140 -
Cmetu01g2184 177 MobiDBLite consensus disorder prediction 111 152 - -
Cmetu01g2184 177 PRINTS Plant phospholipid transfer protein signature 30 46 IPR000528 GO:0006869|GO:0008289
Cmetu01g2184 177 PRINTS Plant phospholipid transfer protein signature 51 65 IPR000528 GO:0006869|GO:0008289
Cmetu01g2184 177 PRINTS Plant phospholipid transfer protein signature 88 105 IPR000528 GO:0006869|GO:0008289
Cmetu01g2184 177 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 14 150 IPR043325 -
Cmetu01g2184 177 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 30 112 IPR036312 -
Cmetu01g2184 177 CDD AAI_LTSS 38 103 - -
Cmetu01g2184 177 Gene3D - 28 109 IPR036312 -
Cmetu01g2184 177 SMART aai_6 31 111 IPR016140 -
Cmetu01g2184 177 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 28 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2184 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1865 Cmetu-Chr5:20187635 Cmetu01g2184 Cmetu-Chr1:7876487 5.10E-22 transposed
Cmetu01g2184 Cmetu-Chr1:7876487 Cmetu06g1810 Cmetu-Chr6:4069608 4.40E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g527 . . . . . . . . . . Cma06g01397 . Car06g01204 . Sed02g1301 . . Bhi01g00791 Tan10g0822 Cmetu01g2184 . Hepe05g1566 . Lcy11g1562 . . . . . . . . . . . . . . Cme06g00596 . Blo07g00223 Bda11g00584 Bda13g00111 . Bpe13g00600 Bma02g00835 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g01309 Csa03g01312 Chy06g00564 Cme01g01576
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001192 1 2 1 1 1 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 2 2 1 2 3 3 3 2 3 4 77