Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2218 ATGAATTTCTTCAGATCGGTGTTTTCCGACGATCCCGATCCTTCCACCACGTCCAAAACTGAACCTCAATCTCCTCAAAAATCCCCCTTCAAAGAAGGAGAAGAATCATCGGATCCCAGTCCTGATTCCAATCCAACCACTGTTGACGATGCCGGAGCTTGGAGTTTCGGTGGGTTGATCAAGACTTTGAGTGCTAAATCGGAGTCGGTTATCGAGACTTACCGACGCGATCTCCAGGAATTTGGTTCGGGTTTGAAGAAGGAAATTGAAGTCGCTCATGGATCGCTGGAGACGCTCCGTTTGAAAGGTACGGCTCAGATTATCGCTCAAGGTAAGGATGCGATCCTTGCTATAGATCAAGAATCTGATTCTGATAGTAGTAGTAATCAAAATTTGAGTAATCAAAGAAGCTCAAATTCCAAGCCATATAGTAGGTTTGATGCTCAGGTTCGTTCGCTTCAAGGCGATACGGCCACTTACTGTGATGAACCTGAAGATTTGGGTGATTATGAGAAGTGGAAATTACAATTTGTTCTGAATGATAAGAGTGAAGAAATTGAAAACTTGATTGAAGAAAATGGAGCTATTGATAATATACACAAGAAGGTTGTTCCTAATGTTGTTGATAATGAAACTTTCTGGTTTAGGTATTTTTATAAAGTGCATAAGCTTAAGCAAGCTGAGGATGTTAGGGCTAATCTTGTGAAGAGAGCTATTGCTAGAGAAGAAGAGGAGGATTTGAGTTGGGATGTTGATGATGATGACGACGACGACAATGAAGGATATAATGAGATGAATGCTGGGTCGAAAGGGGATACAGTGAAGAACGATGTAAGTAATGAAGTTCAGGGTAAGGCTACAAAAAGTGAAGAAGTGAATGTCGAGCATGCTACTGCCAATGTGGAAGTGAAGGATGATTTATCAGCGAAGGAGGAAGTCGGTGGGAAAGAATCTATTGAAGTTGCGAAGGAATTGAATGGAGGAAGCTCTGTTGGTGATGATGAAGAGAGGGAGAAGAGTTCTTCTGTTGAGGAATTAGAAGGAGAAAAGAAAGGGTCTGATCAGAAAGTCCATTTGGAAGGTGGTTCTGGGTCGAATAACAAGGATCAAGGATTGAAATCGGTGGCAGTCGAGGCCAAGTCTGATCATGGTGAATCTTCTAAAGACAGTGATGTTTCAATTGTTTCAACACAGCCTTCGATGCCTGAGGACGAAGATCTCGGGTGGGATGAGATTGAGGATTTGAGCATCATTGAGGAAAAGAAAGGAGTAGTAACTCAAGGTGGAATAACAAATCGAGAGGAAATGCAAAAGCGATTGAGTACTGCTGAAGATGATGAAGATTTGGACTGGGGTACAGATACCGAATAA 1371 42.16 MNFFRSVFSDDPDPSTTSKTEPQSPQKSPFKEGEESSDPSPDSNPTTVDDAGAWSFGGLIKTLSAKSESVIETYRRDLQEFGSGLKKEIEVAHGSLETLRLKGTAQIIAQGKDAILAIDQESDSDSSSNQNLSNQRSSNSKPYSRFDAQVRSLQGDTATYCDEPEDLGDYEKWKLQFVLNDKSEEIENLIEENGAIDNIHKKVVPNVVDNETFWFRYFYKVHKLKQAEDVRANLVKRAIAREEEEDLSWDVDDDDDDDNEGYNEMNAGSKGDTVKNDVSNEVQGKATKSEEVNVEHATANVEVKDDLSAKEEVGGKESIEVAKELNGGSSVGDDEEREKSSSVEELEGEKKGSDQKVHLEGGSGSNNKDQGLKSVAVEAKSDHGESSKDSDVSIVSTQPSMPEDEDLGWDEIEDLSIIEEKKGVVTQGGITNREEMQKRLSTAEDDEDLDWGTDTE 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24222025 24223424 - PI0012622.1 Cmetu01g2218 347492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2218 456 MobiDBLite consensus disorder prediction 120 145 - -
Cmetu01g2218 456 MobiDBLite consensus disorder prediction 375 389 - -
Cmetu01g2218 456 MobiDBLite consensus disorder prediction 269 287 - -
Cmetu01g2218 456 MobiDBLite consensus disorder prediction 244 407 - -
Cmetu01g2218 456 SMART wurzfinal6 173 225 IPR005607 -
Cmetu01g2218 456 ProSiteProfiles BSD domain profile. 173 225 IPR005607 -
Cmetu01g2218 456 MobiDBLite consensus disorder prediction 426 456 - -
Cmetu01g2218 456 MobiDBLite consensus disorder prediction 1 51 - -
Cmetu01g2218 456 Gene3D BSD domain 134 235 IPR035925 -
Cmetu01g2218 456 MobiDBLite consensus disorder prediction 288 319 - -
Cmetu01g2218 456 PANTHER SYNAPSE-ASSOCIATED PROTEIN 19 451 - -
Cmetu01g2218 456 Pfam BSD domain 173 229 IPR005607 -
Cmetu01g2218 456 MobiDBLite consensus disorder prediction 245 262 - -
Cmetu01g2218 456 MobiDBLite consensus disorder prediction 329 357 - -
Cmetu01g2218 456 MobiDBLite consensus disorder prediction 1 30 - -
Cmetu01g2218 456 SUPERFAMILY BSD domain-like 142 231 IPR035925 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2218 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2218 Cmetu-Chr1:24222025 Cmetu06g1123 Cmetu-Chr6:4498988 2.70E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g407 . . . . . . . . . . Cma06g01446 Cma14g01667 Car06g01248 Car14g01501 Sed02g1283 Cpe08g00229 Cpe03g01407 Bhi01g00879 Tan10g0910 Cmetu01g2218 . Hepe05g1507 . . . . . . . . . . . Cone7ag0200 Cone4ag0193 Lsi05g01470 . . Cme06g00662 . . Bda11g00552 . . Bpe13g00632 . Bma06g01531 . Cmo06g01448 Cmo14g01712 . . . . . . . . . . . . . Cla05g00591 Cam05g0650 Cec05g0658 Cco05g0654 Clacu05g0643 Cmu05g0612 Cre05g0680 . Csa03g01387 Chy06g00630 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007884 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 0 36