Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2220 ATGTCAAGCACCAAAGGTCAAGTCATCAAATGCAAAGCTGCAGTGGCATGGGAAGCTGGAAAGCCACTGGTGATTGAAGAAGTGGAAGTGGCACCACCACAAGCTAATGAAGTTCGTGTGAAGATCCTTTTCACTGCTCTTTGCCACACTGATGTTTACTTCTGGGAGGCCAAGGGCCAAACGCCTATGTTCCCTCGAATATTTGGACATGAAGCTGGAGGAGTTGTGGAGAGCGTAGGGGAAGGAGTGACCAATTTGAAAGAAGGTGACCATGTGCTACCAGTATTCACAGGGGAATGTGGAGAATGTCGTCATTGTAAGTCAGAAGAGAGCAACATGTGTGATCTCCTTCGAATCAACACAGACCGTGGAGTAATGATTAGTGATGGCAATACAAGATTCTCTAAAAATGGACAACCAATTTACCACTTTGTTGGAACCTCAACATTTAGTGAATACACAGTTGTTCATGTTGGGTGTTTGGCCAAAATCAACCCTTGTGCCCCTCTTGACATTGTGTGTCCAACTAAGGGTTCCTCAGTTGCTATCTTTGGATTGGGTGCTGTTGGTCTTGCTGCTGCTGAGGGTGCAAGAATTGCTGGGGCATCTAGAATCATTGGAGTTGATCTCAATCCAAGTCGATTTGAAGAAGCTAAAAAGTTTGGTGTCAATGAATTTGTAAATCCAAAGGACTATGACAAACCTGTCCAGCAGGTGATTGCTGAGATGACTAATGGAGGAGTTGATCGAAGTGTTGAATGTACAGGAAGCATCCAAGCAATGATCTCTGCCTTTGAATGTGTTCATGATGGTTGGGGTGTTGCTGTGCTTGTTGGTGTCCCAAACAAAGATGATTCCTTCAAAACTCATCCAATGCAATTTCTTAATGAGAAAACTCTAAAGGGTACTTTCTTTGGTAACTACAGAACTCGTTCCGACATTCCCAATGTTGTGGAGCAGTACTTGAACAAGGAGCTTGAATTGGAGAAATTCATCACCCACTCTGTTCCCTTTTCTGAAATCAACAAGGCTTTCGACTATATGCTAAACGGAGAGTCAATCCGATGCGTCATTCGAATGGAACATAATTGA 1092 43.59 MSSTKGQVIKCKAAVAWEAGKPLVIEEVEVAPPQANEVRVKILFTALCHTDVYFWEAKGQTPMFPRIFGHEAGGVVESVGEGVTNLKEGDHVLPVFTGECGECRHCKSEESNMCDLLRINTDRGVMISDGNTRFSKNGQPIYHFVGTSTFSEYTVVHVGCLAKINPCAPLDIVCPTKGSSVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEAKKFGVNEFVNPKDYDKPVQQVIAEMTNGGVDRSVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDSFKTHPMQFLNEKTLKGTFFGNYRTRSDIPNVVEQYLNKELELEKFITHSVPFSEINKAFDYMLNGESIRCVIRMEHN 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17884881 17886870 + PI0019928.1 Cmetu01g2220 347494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2220 363 FunFam Alcohol dehydrogenase class-P 167 303 - -
Cmetu01g2220 363 Gene3D - 19 352 - -
Cmetu01g2220 363 Pfam Zinc-binding dehydrogenase 188 318 IPR013149 -
Cmetu01g2220 363 SUPERFAMILY GroES-like 310 359 IPR011032 -
Cmetu01g2220 363 CDD alcohol_DH_plants 9 359 - -
Cmetu01g2220 363 PANTHER ALCOHOL DEHYDROGENASE 6 358 - -
Cmetu01g2220 363 SUPERFAMILY GroES-like 4 177 IPR011032 -
Cmetu01g2220 363 Pfam Alcohol dehydrogenase GroES-like domain 36 161 IPR013154 -
Cmetu01g2220 363 Gene3D - 177 303 - -
Cmetu01g2220 363 FunFam alcohol dehydrogenase 1-like isoform X1 19 180 - -
Cmetu01g2220 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Cmetu01g2220 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 173 351 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2220 K18857 - - csv:116405020 686.411
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2220 Cmetu-Chr1:17884881 Cmetu01g2542 Cmetu-Chr1:17845526 1.80E-131 dispersed
Cmetu01g1909 Cmetu-Chr1:17864548 Cmetu01g2220 Cmetu-Chr1:17884881 3.50E-215 proximal
Cmetu01g2220 Cmetu-Chr1:17884881 Cmetu01g1438 Cmetu-Chr1:17915807 2.30E-190 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1210 Blo01g01328 . Bda01g00693 . Bpe02g00613 . . . . . Cma01g00998 Cma09g01088 . . . Cpe06g00889 . . . . . . . . . . . . . . . . . . Cone20ag0403 . . . . . . . . . . Bma01g00875 . . Cmo01g01034 Cmo09g01096 . . . Car09g00986 . Cpe02g00897 Bhi09g01488 Tan01g3362 Cmetu01g2220 . . Mch11g1416 . Cla09g00912 Cam09g0964 Cec09g0969 Cco09g0975 . . Cre09g0933 . . Chy03g00637 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000873 1 4 2 1 2 2 2 2 2 3 2 2 3 3 4 4 2 6 5 2 4 2 1 3 4 2 2 5 6 6 89