Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2255 ATGAGGATTATGATCAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATTTCCTCGCTTCTTGTTAGGAAATCTGCTAAGCAGTGCAAGGCTCGATGGTATGAAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGCGAACTATTGCCCCAATTGTTGGACGTACTCCATCCCAGTGTCTCGAGAGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAGTTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCCGAGAGAAACAACTTGAAGAGGCCAGGAGGCTTGCATCGTTGCAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAGCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAACAGCCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGATGTAGAAGCCCAATTAAGAAAGCAAGATGTTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGCGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTCGCTGGTAATGAAGAGCTTGCAGAGGGAAGTGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGGAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGCATGACTCCAAAAGGTACACCTATTAGAGATGAGTTACGTATCAATGAAGATATGGATGCACATGATAGTGCAAAACTGGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGAAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGATAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGAGGAGAGCTGATGGAGACAAGAGTTCATTTGTTCCACCTACCACGATTGAGCAAGCTGATGAAATGATAAGAAAGGAACTTCTTGCTCTGTTAGAGCATGATAACGCAAAATATCCAATTGACGAAAAGCTCAACAAGGAGAAAAGGAAAGGTTCCAAGCGCGCTGGAAATGGACCTAATGCAGTCATCCCCACAATAGATGATTTTGAAGAAACTGAGATGGAGGAGGCCGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGATGAGTTCGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGATTGGAGAAGAAGGTTAAAGTTCTCACACAGGGCTATGAGACACGGGCAAAACAAAGCCTTTGGCCACAAATTGAGGCAACTTTCAAGCAGATAGACACTGCAGCTACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCACACCGGATTAGTGGTATCTGGGAGGAGTTACGTTATGGAAAACTTTTAGAGGACTTGGAAAAGATGCAGAAAATCATGGTTGATCGCAAGGCACAGGCACAAAAGGAAGAAGATATCGCTGCAGAGAGTCACGCTCTTCAGTTGGCCGAGGCTGAGGCTAACCAAACCGTTGGAGAAAATGCTGATAGTTCTGAAGTCATGTCTGCATCAGTAGCAGCAGTCGATTGTGAAAATTCAGTGCCTGTTACCACCTCCATTGAATTAATAGGTGAACAACCGAACTCGTCAGTGGGACATGAACATGAAACTAATAATGCCATGGATATCGACAGCGAAAAAGAAAGTGTAGCAGTGAATTTGGATATTGGTTTATCTGAAAATAACAAACTACCTTCTGCAGTGGGAGATGCATCACTGCCTGACAGTGGCTTTGAAGAGTCTGTTAAAAGTCAAACCATTGATGTTCCTTCTCGAGAACTTTTGGGCCCTGCTGCAAATGGCACTTCAGATTCGGTTGATGGTGCAGCTATTGAAAATGCTAAATGTAGTAATGATATTGTTGAGGAAGTCAAAGATGTCGAAACTCAGCAGCCTGTGATGGAAACTGAAAATAACTCAGATGTGTGTTCAATTAATCTGGGTGCGGCTGCACCTGCATCTTCTTATGAGGATGGCCCTGTGAATGAGGGCAACGGGGAACTTCCTCGTGACGAAGGATTTTCTTTTAAGAAATATTTTATTAAAGCTTCATATGGAAGATTGGCAGGGCTTACAGATGCAGATAAAGAGGTTCTAGCTATGGTTATCAAAGCTGCGGCAATGATAGATAAAATATTCCACCTGCAGGTTTGGTACAGTAATCCATATTTAAGAGATTGGTTGGAGAAGAGTGCTGCTCTATCAGAGTTAGACGAATTGAAGTGGGCCTATTATAAGATTAATAAGACTCCATGGTCTTCCCTCGATGAAAATGAGGCATATCTGACTACTGCAGATTCGGCAATAATTTTGGTTCCTGAAGCCATTAGGCAAGTTAGGGGGTGGAAGGGCCTGGAATATAAAGCTGCATTTCCATCGCAGATACCTCCTGGGGCAAACTTCTACCCTCCTGACATGGACAAGATGGAATTCGAATTATGGAAGGACAGTCTTACAGAGGATCAGCAAAACTTTGTTACAGGATTCTTCAGTGTCATCAAAAGACGCAGTGAATATAATTTAGATTTGTCTATTTGCAATGGTGGTCTCGATAGCACAAATCACATGGAGGGTTCTACTTATGATTTGTATGGCATACCTTTTTCCCAAGAATATAGTTCTTTCCTATCAAAAGCTGCTGAGTTATTGCATAAAGCAGGAGATATAACTAGCTCTCCCAGTTTGAAGAGGTTATTGCATACCAAGGCCAGTGCCTTCCTCTCCAATGATTACTATGAATCAGATATAGCATGGATGGAATTGGACTCAGAGTTGGATGTTACCATTGGTCCGTATGAGACTTATGTAGATTCAATTTTTGGGTATAAGGCTACATTTGAAGCTTTCATTACAATTCGGGATGATAAAGGAACTGCTCAAGTAAAATTGTTTGGGGATAATATGCAGGTCTTGGAACAAAATCTCCCTATGGACGATGCATACAAATCAAAAGATGTTAGTGCTGCTCCAATACGTGTTGTTCAGCTTGTCTATAATGCTGGGGATGTTAAGGGTCCTCAGATTGTTGCTTTCAACTTGCCCAATGACGAGAGAATTGTGAAAGACCGAGGAACATCAATGGTTATGCTTAAGAATATTTCAGAGGCCAAGTACTGCATATTTCTTGGCCATGGATTAATTTTTATCATCTTATCCAGCTTTGGACATATTCTTCAGCCTATTGCTGATGCTTGTATTAAGAATGAGCAACGTGAGTTTGTGGATTTCGATTCTTATTTTACTCATGTAATTTGCCATGAGTGTTGCCATGGCATTGGACCTCATACCATAACACTTCCGGATGGTAAAGAAACTACCGTGAGATTGGAACTGCAAGAACTCCACTCGGCTTTGGAGGAGGCAAAAGCTGACACTGTAGGCCTTTGGGCACTGAAGTTCCTTACCCTCCAGGGCTTGCTACCAGGAATTTCATTGAAGTCTGTGTATACTACTATCCTTGCGGGATGTTTTCGGTCAGTACGTTTTGGCTTATCAGAGGCTCATGGAAAGGGACAGGCGTTGCTGTTCAATTGGCTATTTGAGAAAGAAGCCTTCATTTTCAATTCAGATGAAACTTTCTCTGTTGATTTTGACAAGGTGGGAGATGCAGTTGAAAGCCTGAGTAGGGAAATACTAACCATACAGGCAAAAGGTGACAAGAAGTCAGCAAATCTGCTTCTTCAGAAATACAGTGTTATGTCAGAACCATTGAAAGTAGCGTTGCAAAATTTAGAACGAATCCAGGTACCCGTGGATATAGCTCCTGAGTTTCCGATTGCCAAAGAAATATTGGGAAAGAAGAAAGGGCTTTTATGCTGA 4380 42.56 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEEEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKRPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDVAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLRRADGDKSSFVPPTTIEQADEMIRKELLALLEHDNAKYPIDEKLNKEKRKGSKRAGNGPNAVIPTIDDFEETEMEEADYLIKEEARYLCDEFEYVKKKMDDDTEKAVRLEKKVKVLTQGYETRAKQSLWPQIEATFKQIDTAATELECFEALQKQEMSAASHRISGIWEELRYGKLLEDLEKMQKIMVDRKAQAQKEEDIAAESHALQLAEAEANQTVGENADSSEVMSASVAAVDCENSVPVTTSIELIGEQPNSSVGHEHETNNAMDIDSEKESVAVNLDIGLSENNKLPSAVGDASLPDSGFEESVKSQTIDVPSRELLGPAANGTSDSVDGAAIENAKCSNDIVEEVKDVETQQPVMETENNSDVCSINLGAAAPASSYEDGPVNEGNGELPRDEGFSFKKYFIKASYGRLAGLTDADKEVLAMVIKAAAMIDKIFHLQVWYSNPYLRDWLEKSAALSELDELKWAYYKINKTPWSSLDENEAYLTTADSAIILVPEAIRQVRGWKGLEYKAAFPSQIPPGANFYPPDMDKMEFELWKDSLTEDQQNFVTGFFSVIKRRSEYNLDLSICNGGLDSTNHMEGSTYDLYGIPFSQEYSSFLSKAAELLHKAGDITSSPSLKRLLHTKASAFLSNDYYESDIAWMELDSELDVTIGPYETYVDSIFGYKATFEAFITIRDDKGTAQVKLFGDNMQVLEQNLPMDDAYKSKDVSAAPIRVVQLVYNAGDVKGPQIVAFNLPNDERIVKDRGTSMVMLKNISEAKYCIFLGHGLIFIILSSFGHILQPIADACIKNEQREFVDFDSYFTHVICHECCHGIGPHTITLPDGKETTVRLELQELHSALEEAKADTVGLWALKFLTLQGLLPGISLKSVYTTILAGCFRSVRFGLSEAHGKGQALLFNWLFEKEAFIFNSDETFSVDFDKVGDAVESLSREILTIQAKGDKKSANLLLQKYSVMSEPLKVALQNLERIQVPVDIAPEFPIAKEILGKKKGLLC 1459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 26706752 26717627 - PI0014272.1 Cmetu01g2255 347529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2255 1459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 94 IPR017930 -
Cmetu01g2255 1459 Gene3D - 1039 1226 - -
Cmetu01g2255 1459 MobiDBLite consensus disorder prediction 200 225 - -
Cmetu01g2255 1459 CDD SANT 10 51 IPR001005 -
Cmetu01g2255 1459 Gene3D - 50 101 - -
Cmetu01g2255 1459 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 550 639 IPR047242 GO:0000398|GO:0000974
Cmetu01g2255 1459 Coils Coil 637 657 - -
Cmetu01g2255 1459 CDD SANT_CDC5_II 46 93 IPR047240 -
Cmetu01g2255 1459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cmetu01g2255 1459 MobiDBLite consensus disorder prediction 97 137 - -
Cmetu01g2255 1459 ProSiteProfiles Myb-like domain profile. 2 49 IPR001005 -
Cmetu01g2255 1459 Pfam pre-mRNA splicing factor component 322 551 IPR021786 -
Cmetu01g2255 1459 MobiDBLite consensus disorder prediction 209 225 - -
Cmetu01g2255 1459 Pfam Myb-like DNA-binding domain 8 50 IPR001005 -
Cmetu01g2255 1459 SMART sant 51 92 IPR001005 -
Cmetu01g2255 1459 SMART sant 6 50 IPR001005 -
Cmetu01g2255 1459 Pfam Peptidase family M49 1057 1225 IPR039461 -
Cmetu01g2255 1459 MobiDBLite consensus disorder prediction 144 163 - -
Cmetu01g2255 1459 FunFam CDC5 cell division cycle 5-like 46 107 - -
Cmetu01g2255 1459 SUPERFAMILY Homeodomain-like 6 73 IPR009057 -
Cmetu01g2255 1459 MobiDBLite consensus disorder prediction 502 524 - -
Cmetu01g2255 1459 Coils Coil 154 174 - -
Cmetu01g2255 1459 Gene3D - 5 49 - -
Cmetu01g2255 1459 ProSiteProfiles Myb-like domain profile. 51 90 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2255 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1947 Cmetu-Chr1:26750087 Cmetu01g2255 Cmetu-Chr1:26706752 3.30E-271 dispersed
Cmetu01g2255 Cmetu-Chr1:26706752 Cmetu02g1658 Cmetu-Chr2:13260946 0.00E+00 dispersed
Cmetu01g2255 Cmetu-Chr1:26706752 Cmetu01g0898 Cmetu-Chr1:26727956 3.60E-279 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g938 . Blo06g00640 . Bda10g00764 . Bpe10g00588 . . . . . . . . . Cpe12g00783 . . . . . . . . . . . . . . . . . . . Lsi02g02651 Csa07g02087 . Cme01g02539 . . . . . . . . Sed09g1406 . . . . . Car17g00858 . . Bhi09g00545 Tan06g0482 Cmetu01g2255 . . . . Cla09g00309 Cam09g0339 Cec09g0341 Cco09g0329 Clacu09g0344 . Cre09g0325 . . Chy01g01933 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g1658 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.5 0.0e+00 1216.1
Cmetu01g2255 . 1 691 MYB-Related Transcription Factor Family AT1G09770 60.5 3.9e-249 858.2
Cmetu06g1582 . 155 608 MYB-Related Transcription Factor Family AT3G18100 54.8 3.8e-138 489.2
Cmetu06g1582 . 155 608 MYB-Related Transcription Factor Family AT3G18100 54.8 3.8e-138 489.2
Cmetu02g1658 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.5 0.0e+00 1216.1
Cmetu01g2255 . 1 691 MYB-Related Transcription Factor Family AT1G09770 60.5 3.9e-249 858.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7346 PF03571 Peptidase_M49 6.30E-08 CL0126 Cmetu TF