Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2322 ATGGGTCGGTGGGGTTCTAGTGGGGTTTTGTTTCTGTTTGGTTTTCTCTGGTTACTCAGCGGCGGAGTTAAGGGGTTTCCAAGTGAAGATCTGGTGCTGCGACTGCCAGGTCAACCGCCGGTTAGCTTTAAACAGTATGCTGGGTATGTTGACGTAGATGTGAAGAATGGGAGGAGTTTGTTCTATTATTTCGTTGAAGCAGAGGAGCAGCCAGAGACGAAACCTCTCACTCTGTGGCTCAATGGAGGTCCTGGTTGTTCTTCTATTGGTGGAGGTGCTTTTACAGAGTTGGGTCCTTTTTATCCCAGTGGGGATGGAAGAGGCCTCAGGAAGAATCCCATGTCTTGGAATAAAGCTTCAAATCTTCTCTTTGTTGAATCTCCTGCTGGAGTGGGATGGTCATACTCAAACACAAGTTCAGATTACAACTGTGGGGATGCCTCAACTGCCAGGGATATGCATATGTTTTTGATGAATTGGTATGAGAAGTTTCCATCATTTAAAAGCAGCGCACTGTATCTTACTGGCGAAAGTTATGCAGGGCATTACATACCACAGTTGGCTATTGCTCTATTGGATCATAATGCAAAGTCCAGTGGTTTCAAGTTCAACATCAAAGGAGTTGCTATTGGGAACCCTCTATTGAAACTTGATAGAGATGTTCCAGCAACATATGAGTATTTTTGGTCGCACGGAATGATTTCAGATGAAATTGGCATTACCATCATGAGCGATTGTGATTTCGAGGATTATACTTTTGCAAGTCCTCACAATGAGTCACATTCATGCAATGAAGCCATATCCATGGCGAACCAAGTTGTTGGGAATTACATAAACAATTACGATGTCATCCTTGACGTGTGCTATCCATCTATAGTGGAGCAAGAGCTACGGTTGAGGAAAATGTTTGGGGTTGATGTCTGCATGACCATGGAACGAAAATTCTACTTCAACCTTCCAGAGGTTCAGAAAGCCCTTCATGCTAACCGTACTAAATTACCTTATCGTTGGTCGATGTGCAGTCCTGTTATAAATTACAGCGACACCGATGGTAACATCAACATACTTCCGTTGCTTAAAAGGATAATCGAAAATCGAATCCCAGTTTGGGTATTCAGGTAG 1122 43.4 MGRWGSSGVLFLFGFLWLLSGGVKGFPSEDLVLRLPGQPPVSFKQYAGYVDVDVKNGRSLFYYFVEAEEQPETKPLTLWLNGGPGCSSIGGGAFTELGPFYPSGDGRGLRKNPMSWNKASNLLFVESPAGVGWSYSNTSSDYNCGDASTARDMHMFLMNWYEKFPSFKSSALYLTGESYAGHYIPQLAIALLDHNAKSSGFKFNIKGVAIGNPLLKLDRDVPATYEYFWSHGMISDEIGITIMSDCDFEDYTFASPHNESHSCNEAISMANQVVGNYINNYDVILDVCYPSIVEQELRLRKMFGVDVCMTMERKFYFNLPEVQKALHANRTKLPYRWSMCSPVINYSDTDGNINILPLLKRIIENRIPVWVFR 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17768571 17771707 - PI0024392.1 Cmetu01g2322 347596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2322 373 Gene3D - 308 344 - -
Cmetu01g2322 373 FunFam Carboxypeptidase 26 290 - -
Cmetu01g2322 373 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Cmetu01g2322 373 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Cmetu01g2322 373 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Cmetu01g2322 373 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Cmetu01g2322 373 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 361 IPR001563 GO:0004185|GO:0006508
Cmetu01g2322 373 Gene3D alpha/beta hydrolase 27 289 IPR029058 -
Cmetu01g2322 373 Pfam Serine carboxypeptidase 36 372 IPR001563 GO:0004185|GO:0006508
Cmetu01g2322 373 SUPERFAMILY alpha/beta-Hydrolases 29 372 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2322 K16297 - - csv:101210351 724.161
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2322 Cmetu-Chr1:17768571 Cmetu10g0828 Cmetu-Chr10:21738478 1.60E-77 dispersed
Cmetu03g0025 Cmetu-Chr3:10110629 Cmetu01g2322 Cmetu-Chr1:17768571 1.40E-55 transposed
Cmetu01g2322 Cmetu-Chr1:17768571 Cmetu12g2015 Cmetu-Chr12:21732266 7.90E-29 wgd
Cmetu01g2322 Cmetu-Chr1:17768571 Cmetu02g2051 Cmetu-Chr2:9339903 1.10E-43 wgd
Cmetu01g2322 Cmetu-Chr1:17768571 Cmetu03g0480 Cmetu-Chr3:10107639 1.10E-59 wgd
Cmetu01g2322 Cmetu-Chr1:17768571 Cmetu07g0999 Cmetu-Chr7:12278317 4.40E-80 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1215 . . . . . . . . Cmo04g02540 Cmo15g00631 . Cma09g01090 . . Sed11g1328 Cpe06g00890 . Bhi04g01820 Tan11g1189 Cmetu01g2322 . Hepe02g2767 . Lcy10g1313 Cla08g00662 Cam08g1093 Cec08g0678 Cco08g0787 Clacu08g0798 . Cre08g0601 . Cone7ag1433 . Cone20ag0399 . . . Cme03g00398 . Blo18g00222 . . . . Bma01g00874 . . . Cmo09g01099 . . Car04g02338 Car09g00988 Cpe01g02099 . Bhi09g01511 . . . . Mch11g1423 . Cla09g00918 Cam09g0970 Cec09g0975 Cco09g0981 . . Cre09g0939 Lsi08g00522 . Chy03g00587 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002124 1 2 1 1 1 2 3 2 2 2 2 2 1 2 3 3 2 3 2 2 2 2 2 2 2 2 3 7 2 2 65