Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2340 ATGCCTAGACTTTTCCTACTTTCTGCATTTTTGCCTCTCCTTCTTCTGGTCCATGTTGATGGTCAAGATCAATCAGGTTTCATTAGCATAGATTGTGGTATACCAGAAAATTCCAATTATACTGACGATATAACAGGGCTCAAGTATGTTTCTGATGCCAAGTTTATCGATACCGGTGAAATCCATGACATATCACCTGAATGCAATAGAAAATTGGATCAGAGTGAGTTTAACAACGCTCAACTCAGGAATCTAAGAAGTTTTCCTGAAGGAAACAGAAGCTGTTACACCATAAGAACACAAGGGGGTGGGGGAGAAAAGTACTTGATCAGAGTGAGTTTCATGTATGGGAACTATGATAACAAACAACAACCACCAACATTTGATTTATTTCTTGGAGTTGATCATTGGGATTCAGTTCATCTGTCAAATGCTTGTGAAATAGTAAGAAAAGAACTGATACATGTCCCAACATTAGATTATATGCAAATCTGTCTAATAAATATTCAAAAAGGAGTGCCTTTCATATCAGCAATAGAGATTAGGCCTCTAGATAATTCCACTTATGTGACAATATCTGGATCCTTGATGCTCCAACAGCGGCTAGACTATGGTTCAGAAAGCAACCGAACTGTAAGGTATCCTAATGATACTTATGATCGGATATGGTTGTCCTCAACCCTACCTGGCTTGCAAAACATATCTTCTAACAGTCCAATTGAGCCGAATATATTTGCAATTCCATCTACTGTCTTGGAAACTGCAGTTACGCCAAAACATTCCCATCAGCCCCTGAATATTTCGTGGAATACTCGTAACAAAATGGATCAGTTCTATATTTACATGCACTTTGCAGATATCCATAAGATGGTGAAAGGGGAGTTACGAGCCTTCGACATCTTGGTCAATGGATTATTATGGTATGGGCAACTGGCTCCTGATTATTTGTCAACAACCACAATCTATAGCGCTAGTGGCACCACAGCTGCAAATGGAGGCAAACTTGAGTTCTCCCTTAAAAGAAATGAAAGTTCAAGTTTTCCACCCCTAATCAATGCCATTGAGATTTTTTTACAAAAACAGTTCCCACAGTTGCAAACAGACCAAGCTGAAATTGAGGCACTGCTGAACATAAAATTAGCATACAATCTGAAGAACTGGCAAGGAGATCCATGTTACCCTCAAAAATACTCGTGGACCAGTCTTAATTGCAGTTACATTAGCGACAGCCCACCGAAAATCATATCTTTGAACTTGTCGTCGAGTGGATTGGCTGGGGGAATTTCTTCTTACATATCAAATCTTACAATGCTACAATACCTGGATTTGTCCAACAATCACTTAAATGGCACGGTTCCAGATTTTCTAGCTAGTCTGCCATTCTTGAGAGTTCTAAACCTGGCAAACAACAATCTCTCAGGGATAATTCCGCAGACACTTATCGAAAGATCAAGAAGTGAAACTTTATCATTGAGTGTCGAAGGCAATCCATATCTTTGTCTATCAGAGCCCTGCAGTAAGAAGAAGAAGGAGTATGTAATTCCATTAGCAGCATCACTTGGTGGAGTTACATTAGCATTGTTAACCGGAGGCGCAATTGTTTGGAGCCAAAGGAGACGAAAGAAGAAAGAAAAACAGATCTCTGGGAGTAGCAAGCAAGGAGAGACATTACTAATGCCAGAGAATACAAAGTTTACCTACTCTGAAATTTTAAGTATAACAAACAACTTTGAGAGGGTAATAGGGAAAGGTGGATTTGGAACAGTTTATCATGGTTACTTGCATAGCATCCAAGTTTCTGTGAAATGCTGTCCCCTGCATCAGTTCAAGGCACAATTGCTTACAACAGTTCACCATGGAAACTTAACTTCTGTACTTGGATATTGTGATGAAGACACTCACCTAGGACTGGTTTATGAACACATGGAAAATGGAAACTTGACTTTAAAATTCTATCTTAGTTCGATTATTCAACGGAGAAACTCACTGAGTTTTTTCTCCCCTAATCTGATTAGAAAAAGCAATCATATCTTGAACTGGAAGGAGAGACTGGGAATTGCTCTGGATGCAGCACAAGGTTGGAAAAACAAACATTTGCTCAACTCAAATCCGATTCTTTTTATTGTTCATTTGACTACTAGTGCTAAATTATAA 2154 38.95 MPRLFLLSAFLPLLLLVHVDGQDQSGFISIDCGIPENSNYTDDITGLKYVSDAKFIDTGEIHDISPECNRKLDQSEFNNAQLRNLRSFPEGNRSCYTIRTQGGGGEKYLIRVSFMYGNYDNKQQPPTFDLFLGVDHWDSVHLSNACEIVRKELIHVPTLDYMQICLINIQKGVPFISAIEIRPLDNSTYVTISGSLMLQQRLDYGSESNRTVRYPNDTYDRIWLSSTLPGLQNISSNSPIEPNIFAIPSTVLETAVTPKHSHQPLNISWNTRNKMDQFYIYMHFADIHKMVKGELRAFDILVNGLLWYGQLAPDYLSTTTIYSASGTTAANGGKLEFSLKRNESSSFPPLINAIEIFLQKQFPQLQTDQAEIEALLNIKLAYNLKNWQGDPCYPQKYSWTSLNCSYISDSPPKIISLNLSSSGLAGGISSYISNLTMLQYLDLSNNHLNGTVPDFLASLPFLRVLNLANNNLSGIIPQTLIERSRSETLSLSVEGNPYLCLSEPCSKKKKEYVIPLAASLGGVTLALLTGGAIVWSQRRRKKKEKQISGSSKQGETLLMPENTKFTYSEILSITNNFERVIGKGGFGTVYHGYLHSIQVSVKCCPLHQFKAQLLTTVHHGNLTSVLGYCDEDTHLGLVYEHMENGNLTLKFYLSSIIQRRNSLSFFSPNLIRKSNHILNWKERLGIALDAAQGWKNKHLLNSNPILFIVHLTTSAKL 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28926265 28932333 - PI0024412.1 Cmetu01g2340 347614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2340 717 PANTHER OS07G0107800 PROTEIN-RELATED 28 695 - -
Cmetu01g2340 717 Pfam Malectin-like domain 30 357 IPR024788 -
Cmetu01g2340 717 SUPERFAMILY L domain-like 392 492 - -
Cmetu01g2340 717 Pfam Protein tyrosine and serine/threonine kinase 577 694 IPR001245 GO:0004672|GO:0006468
Cmetu01g2340 717 Gene3D Ribonuclease Inhibitor 370 493 IPR032675 -
Cmetu01g2340 717 Gene3D Transferase(Phosphotransferase) domain 1 554 711 - -
Cmetu01g2340 717 SUPERFAMILY Protein kinase-like (PK-like) 553 693 IPR011009 -
Cmetu01g2340 717 ProSiteProfiles Protein kinase domain profile. 575 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu01g2340 717 FunFam Leucine-rich repeat receptor-like kinase 370 502 - -
Cmetu01g2340 717 PRINTS Leucine-rich repeat signature 438 451 - -
Cmetu01g2340 717 PRINTS Leucine-rich repeat signature 459 472 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2340 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2340 Cmetu-Chr1:28926265 Cmetu04g0432 Cmetu-Chr4:12898321 5.60E-132 dispersed
Cmetu01g2340 Cmetu-Chr1:28926265 Cmetu01g1795 Cmetu-Chr1:28933744 2.50E-116 tandem
Cmetu01g2340 Cmetu-Chr1:28926265 Cmetu04g0861 Cmetu-Chr4:12870502 1.10E-108 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g421 . . . . . . . . Cmo19g00625 . . . . . Sed05g2434 . Cpe15g00491 Bhi05g01125 Tan02g0904 Cmetu01g2340 . Hepe02g0582 . . Cla02g00596 Cam02g0625 Cec02g0625 Cco02g0640 Clacu02g0629 Cmu02g0625 Cre02g0949 Cone12ag1096 . . . . Csa07g00765 . Cme01g00044 Blo04g00489 . . Bda14g00519 . . Bma03g00519 . . . . . Cma19g00607 . Car19g00461 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011467 0 1 0 0 0 0 0 0 0 1 1 0 1 1 1 1 0 0 0 0 1 1 0 0 0 1 0 0 2 1 13
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70196 PF12819 Malectin_like 3.20E-105 CL0202 Cmetu PK