Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2428 ATGGGTTTCCGTTTGCCTCGAATTGTTACTGCTAAGCAAAGTCTTCAGCGATCTTTATCAATAGGAAATGGAGCATCTCTGAAAGTTATCGATGTTCCTAAGGGCTATTTTACCGTTTATGTCGGTGAGGAACATAAGAAGCGTTTTGTCATCCCACTATCTTACTTAAACCAGCCTTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCCAATGGGTGGCATCACAATTCCTTGCCGTGAAGACGAGTTCCTCGATCTCACACGGAGTTTGAATGAATCATGA 303 40.59 MGFRLPRIVTAKQSLQRSLSIGNGASLKVIDVPKGYFTVYVGEEHKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHPMGGITIPCREDEFLDLTRSLNES 100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5533935 5534358 + PI0021846.1 Cmetu01g2428 347702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2428 100 Pfam Auxin responsive protein 27 96 IPR003676 GO:0009733
Cmetu01g2428 100 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 29 96 IPR003676 GO:0009733
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2428 K14488 - - csv:105436057 180.644
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1781 Cmetu-Chr1:5539723 Cmetu01g2428 Cmetu-Chr1:5533935 5.30E-22 dispersed
Cmetu01g1858 Cmetu-Chr1:5483993 Cmetu01g2428 Cmetu-Chr1:5533935 1.80E-28 dispersed
Cmetu01g2305 Cmetu-Chr1:5539320 Cmetu01g2428 Cmetu-Chr1:5533935 8.80E-44 dispersed
Cmetu01g2428 Cmetu-Chr1:5533935 Cmetu01g2691 Cmetu-Chr1:5499566 1.80E-28 dispersed
Cmetu01g0124 Cmetu-Chr1:5531964 Cmetu01g2428 Cmetu-Chr1:5533935 1.10E-38 tandem
Cmetu01g2428 Cmetu-Chr1:5533935 Cmetu01g2179 Cmetu-Chr1:5537546 3.00E-44 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g71 . . . . . . . . Cmo19g00722 . Cma02g00348 Cma20g00783 . . Sed05g2271 . . Bhi05g01765 Tan02g0733 Cmetu01g2428 . . . . . . . . . . . Cone12ag1204 Cone8ag1250 . . Lsi10g00442 . Chy11g00317 . . . . . . . Bma03g00582 . Sed01g0244 Cmo02g00346 . . . . . . . Bhi10g01917 Tan05g1217 Cmetu11g1982 . . . . . . . . . . . . Csa02g01327 . Cme11g00435
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213