Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2478 ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTTGAAGATGTTTTCAGTGATTTTAGAGGACGGAGAAATGGTGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGGTTTCCAAATGAAGTATGGGAAGTTAATCTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCATTGGGCATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTACATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAGATCTGATAGGAGGCGGCTATTTAGTATGATAAATGATTTGCCAACTGTATTTGAAGTGGTCACCGGTATTGCAAAGAAACAAGTTAAGGAAAAATCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGTTTTAAATCGAGGGAAGCTGAAATGCAAGGAATGTACGCAAGGCAGTCGCAGGCAAGAGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGTGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCCGCAAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAAGCCGCATTTAA 756 42.86 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDRSDRRRLFSMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSFKSREAEMQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 28616521 28619600 + PI0020461.1 Cmetu01g2478 347752

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2478 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Cmetu01g2478 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cmetu01g2478 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Cmetu01g2478 251 Coils Coil 172 192 - -
Cmetu01g2478 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cmetu01g2478 251 FunFam PHD finger alfin-like protein 190 246 - -
Cmetu01g2478 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0006355|GO:0042393
Cmetu01g2478 251 SMART PHD_3 197 245 IPR001965 -
Cmetu01g2478 251 Pfam PHD-finger 198 247 IPR019787 -
Cmetu01g2478 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cmetu01g2478 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2478 K26274 - - csv:101222322 487.648
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2478 Cmetu-Chr1:28616521 Cmetu03g1113 Cmetu-Chr3:5955000 2.60E-108 dispersed
Cmetu01g2478 Cmetu-Chr1:28616521 Cmetu08g0029 Cmetu-Chr8:22903165 4.00E-85 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g1618 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.7 2.1e-113 405.6
Cmetu03g1113 . 9 250 Alfin-like Transcription Factor Family AT1G14510 74.4 2.3e-96 349.0
Cmetu01g2478 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.5 1.2e-92 336.7
Cmetu08g0029 . 3 237 Alfin-like Transcription Factor Family AT1G14510 59.2 2.1e-78 289.3
Cmetu10g1328 . 8 240 Alfin-like Transcription Factor Family AT1G14510 57.3 2.3e-72 269.2
Cmetu03g1113 . 1 252 Alfin-like Transcription Factor Family AT5G26210 77.2 2.6e-108 388.7
Cmetu01g2478 . 1 250 Alfin-like Transcription Factor Family AT5G26210 63.7 1.4e-96 349.7
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 8.2e-94 340.5
Cmetu10g1328 . 7 242 Alfin-like Transcription Factor Family AT5G26210 61.9 1.5e-79 293.1
Cmetu08g0029 . 8 239 Alfin-like Transcription Factor Family AT5G26210 58.1 2.0e-79 292.7
Cmetu03g1113 . 1 252 Alfin-like Transcription Factor Family AT3G42790 74.0 5.2e-101 364.4
Cmetu01g2478 . 1 250 Alfin-like Transcription Factor Family AT3G42790 63.7 8.6e-96 347.1
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT3G42790 72.0 2.4e-90 328.9
Cmetu08g0029 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.3 9.5e-79 290.4
Cmetu10g1328 . 7 242 Alfin-like Transcription Factor Family AT3G42790 63.1 3.6e-78 288.5
Cmetu08g0029 . 1 240 Alfin-like Transcription Factor Family AT5G05610 75.1 2.1e-107 385.6
Cmetu10g1328 . 1 242 Alfin-like Transcription Factor Family AT5G05610 70.2 4.2e-100 361.3
Cmetu03g1113 . 8 252 Alfin-like Transcription Factor Family AT5G05610 65.3 2.1e-91 332.4
Cmetu01g2478 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 1.8e-90 329.3
Cmetu06g1618 . 9 254 Alfin-like Transcription Factor Family AT5G05610 62.2 1.2e-83 306.6
Cmetu08g0029 . 43 240 Alfin-like Transcription Factor Family AT3G11200 77.2 9.5e-89 323.6
Cmetu10g1328 . 43 242 Alfin-like Transcription Factor Family AT3G11200 70.8 7.3e-81 297.4
Cmetu03g1113 . 44 252 Alfin-like Transcription Factor Family AT3G11200 67.5 2.1e-75 279.3
Cmetu01g2478 . 44 250 Alfin-like Transcription Factor Family AT3G11200 66.2 3.5e-75 278.5
Cmetu06g1618 . 44 254 Alfin-like Transcription Factor Family AT3G11200 63.0 2.9e-69 258.8
Cmetu06g1618 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.6e-76 283.1
Cmetu03g1113 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.7e-65 245.0
Cmetu01g2478 . 10 160 Alfin-like Transcription Factor Family AT2G02470 76.8 5.7e-63 238.0
Cmetu08g0029 . 3 135 Alfin-like Transcription Factor Family AT2G02470 72.6 6.4e-54 208.0
Cmetu10g1328 . 8 136 Alfin-like Transcription Factor Family AT2G02470 72.5 9.2e-53 204.1
Cmetu03g1113 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 7.0e-74 273.9
Cmetu01g2478 . 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 5.2e-69 257.7
Cmetu06g1618 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 8.3e-67 250.4
Cmetu08g0029 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.1 4.4e-52 201.4
Cmetu10g1328 . 7 136 Alfin-like Transcription Factor Family AT5G20510 68.9 1.3e-51 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7356 PF12165 Alfin 8.50E-68 No_clan Cmetu TF