Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2498 ATGGACAGTATTCATCCGAGTGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCTGTTCAAGAACAGGAGCATCATGACTTGCATTATATGAGTAATGGGAATGGATTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGTGATCTTGCGGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGAGAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTACAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCGTCGATCCCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATTCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATTGGCCATGGCGAGTTGGGAACCAAATGAGAGCTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTTCGGGACCTCTCAAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCCGAGTCCAACCCGAAAGGTGTTTAG 912 44.96 MDSIHPSDGRMHISHAQHSMHTQSVQEQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAMASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTATFNRNENAVQNGDSESNPKGV 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 27971842 27978032 - PI0028071.1 Cmetu01g2498 347772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2498 303 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Cmetu01g2498 303 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355|GO:0043565
Cmetu01g2498 303 CDD ZnF_GATA 231 286 IPR000679 GO:0006355|GO:0043565
Cmetu01g2498 303 SMART tify_2 78 113 IPR010399 -
Cmetu01g2498 303 Gene3D - 221 289 IPR013088 GO:0006355|GO:0008270
Cmetu01g2498 303 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Cmetu01g2498 303 MobiDBLite consensus disorder prediction 190 224 - -
Cmetu01g2498 303 SMART GATA_3 225 278 IPR000679 GO:0006355|GO:0043565
Cmetu01g2498 303 MobiDBLite consensus disorder prediction 272 303 - -
Cmetu01g2498 303 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355|GO:0043565
Cmetu01g2498 303 Pfam tify domain 84 112 IPR010399 -
Cmetu01g2498 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 289 - -
Cmetu01g2498 303 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Cmetu01g2498 303 PANTHER GATA TRANSCRIPTION FACTOR 28 21 296 IPR045280 GO:0006355
Cmetu01g2498 303 Pfam CCT motif 155 197 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2498 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2498 Cmetu-Chr1:27971842 Cmetu03g0931 Cmetu-Chr3:2895263 1.00E-55 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g2498 . 1 230 Tify Gene Family AT3G21175 56.5 7.3e-59 224.2
Cmetu03g0605 . 45 293 Tify Gene Family AT4G24470 54.1 1.9e-71 266.5
Cmetu01g0685 . 89 298 Tify Gene Family AT4G24470 53.7 1.3e-48 190.7
Cmetu01g2498 . 1 290 Tify Gene Family AT1G51600 59.4 2.3e-87 319.3
Cmetu01g0685 . 86 300 Tify Gene Family AT1G51600 55.2 1.9e-52 203.4
Cmetu03g0931 . 71 246 Tify Gene Family AT1G51600 59.0 6.0e-51 198.4
Cmetu03g0605 . 38 247 Tify Gene Family AT1G51600 52.4 4.0e-47 185.7
Cmetu03g0605 . 45 293 Tify Gene Family AT4G24470 54.1 1.9e-71 266.5
Cmetu01g0685 . 89 298 Tify Gene Family AT4G24470 53.7 1.3e-48 190.7
Cmetu01g2498 . 1 290 Tify Gene Family AT1G51600 59.4 2.3e-87 319.3
Cmetu01g0685 . 86 300 Tify Gene Family AT1G51600 55.2 1.9e-52 203.4
Cmetu03g0931 . 71 246 Tify Gene Family AT1G51600 59.0 6.0e-51 198.4
Cmetu03g0605 . 38 247 Tify Gene Family AT1G51600 52.4 4.0e-47 185.7
Cmetu01g2498 . 1 230 Tify Gene Family AT3G21175 56.5 7.3e-59 224.2
Cmetu05g1474 . 1 180 Tify Gene Family AT4G14713 52.1 1.9e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7359 PF06203 CCT 8.70E-15 CL0281 Cmetu TF