Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2584 ATGGACCACAACGGCGGCGGCGGGAATAGGGCGGAGGCGTTGCGGTGGCTGAGCATAGCGGAGAAGCTTCTGGCGGCGCGTGATTTTTATGGAACTAGGAGCTTTGCGATCCGGGCTAGGGAATCGGACCCAATAGTGCTGGAGGCAGCGGATAGGGTAATCGCTGTCGCGGATACACTGCTGGCGGCGGAGGGACGGATCAACAATCAGTATGACTGGTATAGTATTTTGCAAATTTCACAGCCGACTCAGAGCATTGAGCTAATCGCTACTCAGTATCGGCGACTAGCGCTTCTTCTTCACCCGGAGGCCAATAGAGTGTCTTTTGCGGAACCCGCTTTCAGGCTTGTGTCTGATGCATGGTGTGTGCTTTCGAATCCGTTGAGAAAAGCGTTGTATGATAATGATTATCTTATGTGCTCCAACAAGTTTAGCCCTGGAACGACTGGGTCGAGTCAAAAACCGAAGTCCCCGCCGCAGCAGCCACAATTTCCGCAACCTGTTAGAACTAGTCCGAGGAAGGAGACTAGGATGACGGTAGAGGAGCCTCAACATCAGGAACGGCCACCGCCACCGCCACCGCCGGAACGCCCGCAGCCGCCACCGCCGCAACCACCGGCGCAACCGCCGCAGCCACAACCACCGGCGCAACCGCCGCAGCCACCACCTCCTCAACCATCTCCTCACCGGCCACAGCAGCAGGAAGATCCGCAGCCGCAGCAGCAGCAGCAGCAGCAATTTGTAAGAAAAACCCCCAAATCGATGAATGCTAAAGTAACCGTAGAGGAAGAGAGGCCAAATGTCAGTGATGTCAATGAGTCAACTCAGGAAGCTACTCAGCAGCACATTGATTCAAATCCTCCCTCACGGGAGGCTGAGTCTACTTTACCGACTGAGTCCACTTTGCCGACTGAGTCGAACATTCCGAGTTTCTGGACTGCTTGTCCATACTGTTATAATCTGTACGAATACCCTAAGGGTTACGAGGATTGTGTGCTTAGGTGCCAGAATTGTTCCAAGGCATTTCAAGCACTGGTTATTCCTTCACCGCCGGTAGCTGAAAGTGCTTCTACCTTCTGCTGCTGGGGATTTTTCCCACTTGGGGTTTCTCCCAATGCTAAAGGAGCAGTGGGATCTGTAGCCTGGTCGCCCTTTTCAGCTATGTTTTCCTGTCCTTTGCCTGGTAAGGTGGGAATAAAGTCGGGGAAAACTAGAAATGTTAAACCCGTCAAGAAAGCGACACCAAAATTTTTTTGTGAGGAGGATGATATTTATGTCGAAGTTTCAGAACCAAGTGATAGTTCTGATGAAGAGTGGGGAAGGATAAGTAAGAAGAAGAAGCCTAAGAGGGGTTTAGCTAGTAGAATTGATAAGAGAGCACATTCTGAGAGCTCACTGAAAGGGAACCAAGGAAATGTGGGGAATGGAAACACAGATGAAGTTGAGAATATGAATGGGCAGTTTGGAGAACAAAATGGGTTGGTGAGGTTCGGTTTGTCAAACTCCATAAAGGGTGAGCCCAGTAAGAAGGCTGTGGCAGCCGCAGGGGGTACTGGGAAGAAGCATAAAGGGAAAGGGCCAAAGGAACTAGGTAAGTTGGATTTGAATGTGGAATTCAGCAATGAAGTGGAAGAACCCGCCACAGGCGTAAGTGGAGGACATGGGGAGGATAACATTGAAGGAATTGGGTTCTTTGAGGGACTTGATGAATTTTTGAGTAGTCTGCCAATACTTAATGCTGTGGCCGATGATAAGGTCAAAGCTAGTTAG 1770 50.51 MDHNGGGGNRAEALRWLSIAEKLLAARDFYGTRSFAIRARESDPIVLEAADRVIAVADTLLAAEGRINNQYDWYSILQISQPTQSIELIATQYRRLALLLHPEANRVSFAEPAFRLVSDAWCVLSNPLRKALYDNDYLMCSNKFSPGTTGSSQKPKSPPQQPQFPQPVRTSPRKETRMTVEEPQHQERPPPPPPPERPQPPPPQPPAQPPQPQPPAQPPQPPPPQPSPHRPQQQEDPQPQQQQQQQFVRKTPKSMNAKVTVEEERPNVSDVNESTQEATQQHIDSNPPSREAESTLPTESTLPTESNIPSFWTACPYCYNLYEYPKGYEDCVLRCQNCSKAFQALVIPSPPVAESASTFCCWGFFPLGVSPNAKGAVGSVAWSPFSAMFSCPLPGKVGIKSGKTRNVKPVKKATPKFFCEEDDIYVEVSEPSDSSDEEWGRISKKKKPKRGLASRIDKRAHSESSLKGNQGNVGNGNTDEVENMNGQFGEQNGLVRFGLSNSIKGEPSKKAVAAAGGTGKKHKGKGPKELGKLDLNVEFSNEVEEPATGVSGGHGEDNIEGIGFFEGLDEFLSSLPILNAVADDKVKAS 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1625950 1630674 + PI0015433.1 Cmetu01g2584 347858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2584 589 PRINTS Proline rich extensin signature 157 169 - -
Cmetu01g2584 589 PRINTS Proline rich extensin signature 224 240 - -
Cmetu01g2584 589 PRINTS Proline rich extensin signature 191 203 - -
Cmetu01g2584 589 PRINTS Proline rich extensin signature 203 224 - -
Cmetu01g2584 589 MobiDBLite consensus disorder prediction 271 305 - -
Cmetu01g2584 589 MobiDBLite consensus disorder prediction 146 305 - -
Cmetu01g2584 589 MobiDBLite consensus disorder prediction 234 253 - -
Cmetu01g2584 589 Pfam DnaJ domain 72 134 IPR001623 -
Cmetu01g2584 589 ProSiteProfiles dnaJ domain profile. 72 137 IPR001623 -
Cmetu01g2584 589 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 5 475 - -
Cmetu01g2584 589 MobiDBLite consensus disorder prediction 185 233 - -
Cmetu01g2584 589 MobiDBLite consensus disorder prediction 429 483 - -
Cmetu01g2584 589 MobiDBLite consensus disorder prediction 508 532 - -
Cmetu01g2584 589 Gene3D DnaJ domain 62 146 IPR036869 -
Cmetu01g2584 589 CDD DnaJ 72 126 IPR001623 -
Cmetu01g2584 589 SUPERFAMILY Chaperone J-domain 66 135 IPR036869 -
Cmetu01g2584 589 SMART dnaj_3 71 129 IPR001623 -
Cmetu01g2584 589 MobiDBLite consensus disorder prediction 256 270 - -
Cmetu01g2584 589 MobiDBLite consensus disorder prediction 465 483 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2584 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2584 Cmetu-Chr1:1625950 Cmetu07g0289 Cmetu-Chr7:2291549 5.60E-21 dispersed
Cmetu01g2584 Cmetu-Chr1:1625950 Cmetu04g1993 Cmetu-Chr4:31472175 3.20E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g508 . Blo12g00731 . Bda03g00457 . Bpe04g00418 Bma04g00432 . . . Cma01g01645 Cma09g00593 . . . Cpe06g00454 . . . . . . . . . . . . . . . Cone6ag1532 . . . Lsi04g02278 Csa03g04491 Chy04g00209 . . . . . . . . . Sed14g1000 Cmo01g01695 Cmo09g00579 . . . Car09g00524 . . Bhi09g02496 Tan01g3850 Cmetu01g2584 . Hepe01g2168 Mch11g0707 . Cla11g01422 Cam11g1478 Cec11g1508 Cco11g1504 Clacu11g1639 Cmu11g1457 Cre11g1875 . . . Cme04g00239
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008143 2 1 2 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 2 1 0 34