Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2620 ATGGCGGATATATCTCATTCTTATATCGAGCAGTTATTGAAAGAAGCAAAAAATCGTTGGTTACGTCCAGCTGAAATTTGTGAAATACTCCGTAACTACACTAAGTGGGTCACTTTTTCTTTTGACCGGAAGGTTCTGAGGTACTTTAGAAAGGATGGACATAAATGGAGGAAGAAGAAAGATGGCAAAACTGTAAGGGAAGCTCATGAGAAGCTGAAGGTTGGAAGTATTGATGTATTGCACTGCTATTATGCCCATGGAGAAGAAAATGAGAACTTTCAAAGGCGCAGTTATTGGATGCTTGAAGAGCATTTAATGCACATTGTTTTTGTCCACTACTTGGAAGTTAAGGGTAATAGAACCAATGTTGGAGCTGTCGTTGAGACTGATGAGGTTTCAACAAGTTCACAGAAGAGTAGTACTAGAAGTTCTAGCTATTCCAGCAGTCATAATCAAGCAGCTTCTGAAAATGCAGATTCCCCCAGTCCGACTAGCACTTTGACATCATTTTGTGAAGATGCTGATAATGAAGACACTTACCAAGCAACTTCAAGATTTCACTCATTTCCCACGTCACCTAGACTGGGAAATGGTCTTCTGGTGAATAAACAAGATGCTGGTCAATCAAATTTTTATTTTCCGCATTCCTCTTCCAACAATACTGAAGCTTGGTCATCAGTTCCTGCTGTGGATTATGTAACACAAGTCCAGAAAGATGGACTTGGGGGTAACGGTGGTGATACTGGTATGATGGGTTCTCAGAAGACACTCAGTTCTGCCTCGTGGGAAGAGATCTTGCAACAATGTACAACTGGATTTCAAACTGTACCTTCTCATGTTTTAACCTCTTCAATTGAACCTCTGTCTTCTGGAATTGTCTTTGGACAAGAGAATTCAACTCCTGACAAGCTTTTAACCAGTAATAGTGCTATTAAAGAGGACTTTGGGAGTTCTCTGACAATGACATCAAACTGGCAGGTTCCTTTTGAAGACAATACTTTGTCCTTTTCAAAAGAGCACGCTGATCATTTTCCAGATTTGTATTCAGTTTGTGACATAGATAGCAGGTTAACTGCGCAGAAATCTCACGATGCAACTTTTGGAAGTGGTCATGAGATGTTTTGTGCTCATCCTGGCAAACTGAATGAGGAGATTTTGCCAAACCTTGAATTACAGTTCAAAGAAGGAGAATCGTATTCAGCTATGAGGTTGAGTTCTGACAATGATATGTCTAAAGAAGGTACTATCAGCTATTCTCGGACTTTGAAACAATCATTAATAGATGGAGAGGAGAGTTTAAAGAAAGTTGACAGCTTCTCAAGGTGGGTATGTAAGGAGCTTGAGGAAGTTGATGATTTACACATGCATCCATCATCTGGCTTGTCTTGGACCACTGTAGAATGTGGTGATATGGTTGATGATTCATCATTAAGCCCTTCTATTTCTGAAGACCAGCTTTTCAGTATAACAGCCTTTTCTCCAAAGTGGACAGTTGCAGATTTAGAAACTGAGGTTGTGGTTATAGGGAGGTTTCTGGGGAACAATAATGGCACAAACTGCCATTGGTCATGTATGTTTGGGGAAGTTGAGGTGCCTGCAGAGGTTTTGGCTGATGGAATCCTGTGCTGTCATGCACCACCACATAGTGTTGGGCGAGTCCCCTTTTATGTCACATGTTCCAACAGAGTAGCTTGCAGCGAGGTGCGTGAATTTGATTACTTAGCAGGCTCTGCACAAGATGTAGATGTTACCGATATATACAATGCTGGTGCTACAGAAGAATTACGTATGCATTTGCGATTTGAGAGGTTACTGTCTCTTGAACCATCAGATCCTTCAAATGACCTCTCTGAAGGTGCTTTGGAGAAGCAAAACTTGATCAGAGAGCTTATCACAGTAAAGGAAGAAGATGATAGTTATGGGGAAGATCCAAATCCTCAGAATGATCAAATTCAGCATCAAAGCAAGGAGTTCCTTTTTGTAAAGCTGATGAAAGAAAAGCTTTACTCATGGCTTATCCACAAAGTTATTGAAGGTGGCAAAGGTCCTAATATATTGGATGGTGAGGGGCAGGGGGTAATTCATTTAGCAGCAGCCCTTGGTTATGATTGGGCCATCAGACCAATTGTAGCTGCAGGAGTGAGTATCAACTTTCGAGACATTAATGGATGGACTGCTCTTCATTGGGCAGCACTATGTGGCAGGGAGTTGACAGTTGTAACCCTTATAACACTGGATGCTTCTCCTGGACTGATGTCAGATCCTTCTCCAGAAGTTCCTTTGGGCATGGTGCCTGCGGATCTTGCATCTATTAATGGACACAAAGGGATCTCTGGTTTCCTCGCAGAGGCAGCATTGACCAGCTATGTCAGTTCCATATCAATGGCTGAGACTGTAGAAGATGGTGTGTCAGGCGTTTCAAGGACGAAACCTGTGCAAACTGTTTCTGAACGAAGGGCAACACCGGTAAATGATGGTTTCATGCCTGGCGATTTGTCCTTGAAGGATTCATTGACTGCTGTCTGCAATGCTACTCAAGCTGCTGGCCGTATACATCAGATATTAAGAGTGCAGTCATTTCAGAGGAAAAAATTATCAGAGTGTGGAACTGATGAATTTGGATCCTCAGATAATAGTATTCTTTCATTTATGAAAGCCAGGGGACGTAAGTCTGGACTAAGTAACAACCCAGCTCATGCTGCTGCTGTTCAGATACAGAAAAAGTTCCGTGGTTGGAGAATGAGAAAAGAATTCTTGCTAATACGTCAAAGAATAGTGAAAATTCAGGCCCATGTCAGAGGACACCAGGTGAGAAAGCAATATAAAAAGATTGTCTGGTCGGTAGGAATGATAGACAAGATTATTTTGAGATGGAGACGGAAGGGCAGTGGTTTGCGAGGCTTCCGATCAGATGCAGTTGCCAAGGATCCACCCGCCGTGATGGCACCACCTACTAAAGAAGATGATTATGATTTTCTGAAGGAAGGAAGGAGGCAGACTGAGGAGAGATTTCAAAAAGCACTTACTAGAGTCAAGTCCATGGCACAGTATCCCGAGGGACGAGACCAATACCGTAGGCTTCTTACTGTGGTCCAAAAGTGCCGAGAAACCAAGGGGAGTACTATGGTTGTTACTAGTACTTCAGAAGAGGTAATAGAAGGCGATGACATGATTGATATCGACACACTGCTGGATGACGACGCTTTGATGTCTATGACATTTGATTGA 3228 42.35 MADISHSYIEQLLKEAKNRWLRPAEICEILRNYTKWVTFSFDRKVLRYFRKDGHKWRKKKDGKTVREAHEKLKVGSIDVLHCYYAHGEENENFQRRSYWMLEEHLMHIVFVHYLEVKGNRTNVGAVVETDEVSTSSQKSSTRSSSYSSSHNQAASENADSPSPTSTLTSFCEDADNEDTYQATSRFHSFPTSPRLGNGLLVNKQDAGQSNFYFPHSSSNNTEAWSSVPAVDYVTQVQKDGLGGNGGDTGMMGSQKTLSSASWEEILQQCTTGFQTVPSHVLTSSIEPLSSGIVFGQENSTPDKLLTSNSAIKEDFGSSLTMTSNWQVPFEDNTLSFSKEHADHFPDLYSVCDIDSRLTAQKSHDATFGSGHEMFCAHPGKLNEEILPNLELQFKEGESYSAMRLSSDNDMSKEGTISYSRTLKQSLIDGEESLKKVDSFSRWVCKELEEVDDLHMHPSSGLSWTTVECGDMVDDSSLSPSISEDQLFSITAFSPKWTVADLETEVVVIGRFLGNNNGTNCHWSCMFGEVEVPAEVLADGILCCHAPPHSVGRVPFYVTCSNRVACSEVREFDYLAGSAQDVDVTDIYNAGATEELRMHLRFERLLSLEPSDPSNDLSEGALEKQNLIRELITVKEEDDSYGEDPNPQNDQIQHQSKEFLFVKLMKEKLYSWLIHKVIEGGKGPNILDGEGQGVIHLAAALGYDWAIRPIVAAGVSINFRDINGWTALHWAALCGRELTVVTLITLDASPGLMSDPSPEVPLGMVPADLASINGHKGISGFLAEAALTSYVSSISMAETVEDGVSGVSRTKPVQTVSERRATPVNDGFMPGDLSLKDSLTAVCNATQAAGRIHQILRVQSFQRKKLSECGTDEFGSSDNSILSFMKARGRKSGLSNNPAHAAAVQIQKKFRGWRMRKEFLLIRQRIVKIQAHVRGHQVRKQYKKIVWSVGMIDKIILRWRRKGSGLRGFRSDAVAKDPPAVMAPPTKEDDYDFLKEGRRQTEERFQKALTRVKSMAQYPEGRDQYRRLLTVVQKCRETKGSTMVVTSTSEEVIEGDDMIDIDTLLDDDALMSMTFD 1075
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1878382 1891824 - PI0018542.1 Cmetu01g2620 347894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2620 1075 SUPERFAMILY E set domains 489 573 IPR014756 -
Cmetu01g2620 1075 SMART iq_5 897 919 IPR000048 GO:0005515
Cmetu01g2620 1075 SMART iq_5 920 942 IPR000048 GO:0005515
Cmetu01g2620 1075 Pfam CG-1 domain 15 115 IPR005559 GO:0003677
Cmetu01g2620 1075 MobiDBLite consensus disorder prediction 128 170 - -
Cmetu01g2620 1075 FunFam Calmodulin-binding transcription activator 2 482 577 - -
Cmetu01g2620 1075 ProSiteProfiles CG-1 DNA-binding domain profile. 9 122 IPR005559 GO:0003677
Cmetu01g2620 1075 Gene3D - 648 790 IPR036770 -
Cmetu01g2620 1075 Gene3D Immunoglobulins 482 577 IPR013783 -
Cmetu01g2620 1075 ProSiteProfiles IQ motif profile. 898 927 IPR000048 GO:0005515
Cmetu01g2620 1075 FunFam Calmodulin-binding transcription activator 2 897 945 - -
Cmetu01g2620 1075 Pfam IPT/TIG domain 488 561 IPR002909 -
Cmetu01g2620 1075 Gene3D - 898 945 - -
Cmetu01g2620 1075 ProSiteProfiles IQ motif profile. 921 945 IPR000048 GO:0005515
Cmetu01g2620 1075 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 9 1037 - -
Cmetu01g2620 1075 SUPERFAMILY Ankyrin repeat 668 783 IPR036770 -
Cmetu01g2620 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 897 948 IPR027417 -
Cmetu01g2620 1075 Pfam IQ calmodulin-binding motif 923 942 IPR000048 GO:0005515
Cmetu01g2620 1075 Pfam IQ calmodulin-binding motif 899 918 IPR000048 GO:0005515
Cmetu01g2620 1075 SMART CG_1_2 12 117 IPR005559 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2620 K21596 - - csv:101203707 1998.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2620 Cmetu-Chr1:1878382 Cmetu08g0038 Cmetu-Chr8:15486540 1.10E-136 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g2620 . 9 1075 CAMTA Transcription Factor Family AT5G64220 51.5 4.5e-255 878.2
Cmetu11g2536 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.8 1.3e-254 876.7
Cmetu11g0256 . 34 905 CAMTA Transcription Factor Family AT3G16940 54.6 6.8e-259 890.6
Cmetu11g0256 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.9 8.6e-194 674.5
Cmetu01g2620 . 9 1075 CAMTA Transcription Factor Family AT5G64220 51.5 4.5e-255 878.2
Cmetu11g2536 . 6 933 CAMTA Transcription Factor Family AT1G67310 52.8 1.3e-254 876.7
Cmetu11g0256 . 11 628 CAMTA Transcription Factor Family AT4G16150 53.9 8.6e-194 674.5
Cmetu11g0256 . 34 905 CAMTA Transcription Factor Family AT3G16940 54.6 6.8e-259 890.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7371 PF03859 CG-1 1.10E-35 No_clan Cmetu TF