Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2623 ATGTGGGGGAGGGAGGTGATTCAAATTTCAAATTTAGATTTGGGAATCGCCATTAGAATAGAGAAGAAGATGGGGGTTGTGGGGTTTTCTTGTTCTTGTTCTTGTACTTTTGTTGTGGTTATTGCTGTTTTGGTTATGGTTTTGAATGGAGTGGAGGTGTGTTATGGAGGTAAAACAAGCCACTTTCTGAGGAAGGTTGAGAAAACTGTGGATATGCCTCTTGACAGTGATGTTTTTGCTGTTCCTCCTGGTTTTAATGCTCCCCAGCAGGTTCATATCACACAAGGAGATCATGAAGGGAAGGCAGTGATTGTTTCATGGGTCACTCCAAATAAACCAGGATCAAATGAAGTATTGTATTGGAGTGAGAAAAGCAAGCAAAAGAAACAGGCCTTTGGAAAAGTATATACTTACAAGTTCTATAATTACACTTCTGGCTACATTCATCACTGTACCATTGAAAACTTAAAGTACAACACCAAATACTACTATGAAGTTGGAATCGAGTACTCTCCAAGAACATTCTGGTTTGTCACTCCTCCAGAAGTCGGTCCCGATGTCCCCTATACATTTGGTCTCATAGGGGATCTTGGCCAGAGTTTTGATTCAAATGCAACGCTGACACATTACGAACGAAACCCGCATAAAGGAAAAACAGTGCTATTTGTTGGAGATCTCTCTTATGCTGACAACTATCCATTCCATGACAATGTAAGGTGGGATACATGGGGAAGATTCACAGAGAGAAGCATCGCCTATCAGCCTTGGATATGGACTGCAGGAAATCATGAAATTGATTTTATCCCAGAAATTGATGAGACCGAGCCTTTCAAGCCATTTACTAACCGATATCATGTCCCTTATAAAGCATCTGAGAGCACATCTCCTTTTTGGTACTCAATCAAGAGAGGTCCAGCATACATCATAGTCTTGGCTTCATATTCAGCTTATGGTAAATACACTCCTCAATACAAATGGCTTGAAGCAGAGCTACCGAAAGTTAACAGAAGTGAAACACCATGGTTAATTGTTCTTGTGCATTCCCCGTGGTACAACAGCTACAACTATCACTACATGGAAGGAGAAACTATGCGAGTGATGTATGAGTCATGGTTTGTACAATATAAAGTCGACGTCGTCTTTGCTGGCCATGTCCATGCTTATGAAAGAACTGAAAGAATTTCAAATATTGCATACAACATAGTGAATGGCCATTGTACTCCAGTGAAAGATCAATCTGCTCCTGTATACATAACAATAGGTGATGGAGGAAACCTTGAAGGCCTAGCAACCAATATGACGGAGCCACAACCTGCGTACTCAGCGTATCGTGAAGCAAGCTTTGGCCATGGCATATTTGATATAAAGAACAGAACTCATGCGTATTTCAGTTGGAACAGGAATCAAGATGGATATGCAGTTGAAGCTGATACTCTTTGGTTCTTCAATAGACACTGGCACCCGGTTGACGAGTCGTTGAGTGAGCAGAAATGA 1494 41.23 MWGREVIQISNLDLGIAIRIEKKMGVVGFSCSCSCTFVVVIAVLVMVLNGVEVCYGGKTSHFLRKVEKTVDMPLDSDVFAVPPGFNAPQQVHITQGDHEGKAVIVSWVTPNKPGSNEVLYWSEKSKQKKQAFGKVYTYKFYNYTSGYIHHCTIENLKYNTKYYYEVGIEYSPRTFWFVTPPEVGPDVPYTFGLIGDLGQSFDSNATLTHYERNPHKGKTVLFVGDLSYADNYPFHDNVRWDTWGRFTERSIAYQPWIWTAGNHEIDFIPEIDETEPFKPFTNRYHVPYKASESTSPFWYSIKRGPAYIIVLASYSAYGKYTPQYKWLEAELPKVNRSETPWLIVLVHSPWYNSYNYHYMEGETMRVMYESWFVQYKVDVVFAGHVHAYERTERISNIAYNIVNGHCTPVKDQSAPVYITIGDGGNLEGLATNMTEPQPAYSAYREASFGHGIFDIKNRTHAYFSWNRNQDGYAVEADTLWFFNRHWHPVDESLSEQK 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5877395 5881050 + PI0019042.1 Cmetu01g2623 347897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2623 497 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 87 183 - -
Cmetu01g2623 497 Pfam Purple acid Phosphatase, N-terminal domain 88 170 IPR015914 GO:0003993|GO:0046872
Cmetu01g2623 497 Pfam Iron/zinc purple acid phosphatase-like protein C 414 473 IPR025733 -
Cmetu01g2623 497 SUPERFAMILY Purple acid phosphatase, N-terminal domain 69 181 IPR008963 GO:0003993|GO:0046872
Cmetu01g2623 497 FunFam Fe(3+)-Zn(2+) purple acid phosphatase 184 492 - -
Cmetu01g2623 497 Gene3D - 184 493 IPR029052 -
Cmetu01g2623 497 PANTHER ACID PHOSPHATASE RELATED 38 482 IPR039331 GO:0003993
Cmetu01g2623 497 Pfam Calcineurin-like phosphoesterase 190 388 IPR004843 GO:0016787
Cmetu01g2623 497 SUPERFAMILY Metallo-dependent phosphatases 185 491 IPR029052 -
Cmetu01g2623 497 Coils Coil 492 497 - -
Cmetu01g2623 497 ProSiteProfiles Fibronectin type-III domain profile. 87 182 IPR003961 GO:0005515
Cmetu01g2623 497 Gene3D - 87 183 - -
Cmetu01g2623 497 CDD MPP_PAPs 185 483 IPR041792 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2623 K22390 - - csv:101211612 984.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2623 Cmetu-Chr1:5877395 Cmetu04g0882 Cmetu-Chr4:3943950 1.20E-181 dispersed
Cmetu01g2623 Cmetu-Chr1:5877395 Cmetu03g0999 Cmetu-Chr3:2090504 3.30E-200 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1026 . . . . . . . . . . . . . . Sed04g3913 . . Bhi04g00213 Tan02g0773 Cmetu01g2623 . Hepe02g0485 . . Cla08g01452 Cam08g1937 Cec08g1511 Cco08g1650 Clacu08g1627 . Cre08g1413 . . . . . . . . Blo17g00768 . . . . . . Bma05g00144 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000712 2 3 4 4 1 3 4 3 3 3 3 3 3 3 3 3 3 5 4 3 4 3 3 3 3 3 3 4 3 5 97