Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2709 ATGGCTCTGCATAGAATTCCTCACACCATTCTAGTGGAGATCCTACTGAAGCTTGACCTCCAAACCCTTTGCTCCATCGCATGCATCAGCAAAACCCTACAATCCGCCGTCGTTGACGCCATTTCTCTTATCTCCACTCTCCATCTTCCTATCGCTTTCTCTCCGGATTCTCAAACTCTGAAGATTGGCATTCTTGGTCGGTGCCGAGGCATGAGTAGCCTGACTGTTAACTGCCTTCATCTTCATGATTCTTCTCTCGTGGATTTTTTTGGCCCTCATTTACTCGAGCTGAACTTGTTTTGCTGCTCTTTACTCTCTTATAAATTCCTTGCTGTCATAGGCAAACTTTGTCCCAATTTGAGGGTGCTTGTGCTTGAATTGGTAGCTCAAGATTCTCCTGAGGTATTCAATACAAACTTGACTGAATTGCTCACAAGATGCTTGTTCTTAGATTCAATATCCCTGAAGATTCAAGGAGCAGGAGATGTTGAGGCTAATTACTTTAGTAGCGTTGAAGCATTTCTTCCCAAAACCGTCAAATCACTGAAGTTGAAGTCACTGCTTCATCAAGAAGGAATTTGCATCATAAACAAGCTAAGAGATTCTGGGAACTCCTTAATCACCACTTATTCCGGAAACTTTGAATCTCCTCAGTTATCTTCAGGGTTAATGTTGCAGTGCTTGTCACTTACCTTGGATCTTCACTTGGAAGACATGCCGAACCAAAAACAATTGGTGCACCATGACTTGACCAATAGAGGACTTCAGTCATTGAGCACTTGTCATAATCTGATATCACTTTCTCTTATTCGTGGTAGGCATAACCACCAAGTCTCTTTCAAAAAGCTGAATGATATGGGCATGTTTCTCTTGTCTGAGGGTTGCAAACGTCTTGAGTCAGTGAGATTCTGTGGATTCTCTAAAGTCAGTGATGCTGGATTTGCATCGATCTTTCATTCATGCAATAGGCTGAAGAAATTTGAGATTCGTAATTCAACACATTTCTCAGACCTTGCACTCGAAGGTTTTGATGCCATTGGATGCTCCATAAAAGACTTAAGATTATTATCATGCAGCCTTATAACTTGTGAATCTGTGAAGCACATATCGGATTCTTGCATTGATTCCATTTCCACTTTGTGTAATTTATCATCCCTGAATCTAACATCAACTGATATAACCGACGATGGTTTAACTGTTCTTGGTCAGGGTAGTCTACCCATCATTCGATTGTCTCTTCGAAGCTGTAAGAGAGTAACCGAAGAAGGAATCTATCGATTGTTTTGTGGTGGTGGGACAATGAGCAAGATGTTGTCTGCCTTGGATCTCGGACACATTTCGGGAATAACAGATCGAGCAATCCAAATAATTGCTTCAGCTGGTGTCAGGATTACTGAGTTATGCATCAGATCATGCGTCCATGTGACTGATTCTTCAGTGGAAGCTTTGGGGATGAAGAAAAATCTCCAAGGTGAAGGTAAGTTACTTCGTAGGCTTGATCTTTTTAATTGCATTGGTTTATCAATTGGTGCATGTAGATCATTTAGGGGACCTCAGTTTGGTGGGTTACAATGGCTAGGAATAGGCAATACACGTTTGTGTAGTAATGGAGATGTTAATTTGGTCGAGTTTTGTTTCAAACGACCTTGGTTGACTTTGTGTTTGGAAGGCTGTGAAGTAGGATGTCATGATGGATGGCAATTCCATAGATCATAG 1716 41.43 MALHRIPHTILVEILLKLDLQTLCSIACISKTLQSAVVDAISLISTLHLPIAFSPDSQTLKIGILGRCRGMSSLTVNCLHLHDSSLVDFFGPHLLELNLFCCSLLSYKFLAVIGKLCPNLRVLVLELVAQDSPEVFNTNLTELLTRCLFLDSISLKIQGAGDVEANYFSSVEAFLPKTVKSLKLKSLLHQEGICIINKLRDSGNSLITTYSGNFESPQLSSGLMLQCLSLTLDLHLEDMPNQKQLVHHDLTNRGLQSLSTCHNLISLSLIRGRHNHQVSFKKLNDMGMFLLSEGCKRLESVRFCGFSKVSDAGFASIFHSCNRLKKFEIRNSTHFSDLALEGFDAIGCSIKDLRLLSCSLITCESVKHISDSCIDSISTLCNLSSLNLTSTDITDDGLTVLGQGSLPIIRLSLRSCKRVTEEGIYRLFCGGGTMSKMLSALDLGHISGITDRAIQIIASAGVRITELCIRSCVHVTDSSVEALGMKKNLQGEGKLLRRLDLFNCIGLSIGACRSFRGPQFGGLQWLGIGNTRLCSNGDVNLVEFCFKRPWLTLCLEGCEVGCHDGWQFHRS 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9271694 9273958 + PI0015018.1 Cmetu01g2709 347983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2709 571 SMART LRR_CC_2 461 486 IPR006553 -
Cmetu01g2709 571 SMART LRR_CC_2 321 346 IPR006553 -
Cmetu01g2709 571 SMART LRR_CC_2 435 460 IPR006553 -
Cmetu01g2709 571 SMART LRR_CC_2 380 404 IPR006553 -
Cmetu01g2709 571 SMART LRR_CC_2 405 430 IPR006553 -
Cmetu01g2709 571 SMART LRR_CC_2 295 320 IPR006553 -
Cmetu01g2709 571 SMART LRR_CC_2 347 372 IPR006553 -
Cmetu01g2709 571 Gene3D Ribonuclease Inhibitor 435 538 IPR032675 -
Cmetu01g2709 571 ProSiteProfiles F-box domain profile. 1 47 IPR001810 GO:0005515
Cmetu01g2709 571 PANTHER UNCHARACTERIZED 64 424 - -
Cmetu01g2709 571 SUPERFAMILY RNI-like 246 548 - -
Cmetu01g2709 571 SUPERFAMILY F-box domain 5 39 IPR036047 GO:0005515
Cmetu01g2709 571 Gene3D Ribonuclease Inhibitor 47 434 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2709 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0006 Cmetu-Chr1:4954475 Cmetu01g2709 Cmetu-Chr1:9271694 1.30E-50 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g797 . . . . . . . . . . . Cma09g01048 . Car09g00956 Sed01g2636 Cpe06g00856 . Bhi09g01852 Tan01g3265 Cmetu01g2709 . . Mch11g1340 . . . . . . . . . . . . Lsi02g01779 Csa07g01034 . . . . . . . . . . . . Cmo09g01054 . . . . . . . . . . . . . Cla09g02121 Cam09g2208 Cec09g2281 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013838 0 2 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 1 24