Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu01g2730 ATGGAAGCCGAAGAAGATGATTCTTCATATCACAACCAAAAATCTTCTTCTTTGTATGTTGATGATGGAAACTTAGATGTTAAGTGTGATACCAATCGAGAAGAGCTTCATAGCAATGAACAACAGCATTGTGTATCCAAGTCCTCAATTATCGAAACGGATTTTTCACCTAATACCGTTGTGGAATCTTTACCACCTAGAGATGCAATCTTGGGGATGAGATTCTTGCTGTGGGTACGAGAGAGAGATAGCAGAGGAGAAGGATTTTCGCAACATTATTCAAGGTTTGGCGAAGATTCAGTGAAGTTGGAGATTGAACCTGATATTGCGAACACGGGGTTATTGAAGCAAAGGGCTTTCGATGATGTGAAAATGAATACAGGGGTGACGGAGGAGGAGAAGGCTTTGAGTGAATTTGCTGAAGGTGAGTTGTTACCGGAAATGGTTTTTGCTGGTGTCGCTGAAAATCAGGTTGAGGGCAACGTTTTAATGGCGAATTTTTCAGAGGATACAGTCGTAGACGGTTCAGCTGGCTGTGTAGAGACAACCGAGACGACGTGTCTGAGTGATGTTTTGGCCGAGGAAACACTTGCAGAAACGACTCTTTTTGTGCAGGATGTAGATGTTACTGATGCAACCAATTTGGTGGAGAAGACAGAAGTGGAAGAGCACGCTGATGACGCCAATGATTCGAAGGATACAGAGGTGCCAAAGCAAGAAAATTTTGCTGTGGAGAAGATGGAATTAGGCGTCCGGGTGCAGTTGGAAGAGAACTCTGAGTTGAAAGTTAGTTTGGTAGATGGGGCTGTGGAGGGACGGACGGAAAATTTAGCAGACAGAACTGGTGAAACGTCGAAGATGGAGAATGCCTCAAGCACTACTAATGAGGTGGGGCTGACACATTTTGCTGTGGAGATTAATGAGACGGTAAATATAGGCAATGCTGAAGACAAGACTATTGAGATGGATGGAATGTGTATGGAAGACAAGGCCACTGATGTGGGGATGATGGAGAATTTGGCAGATGAGACCCCAGAGATTAAGGGAGTGGACGTAGCAGATTACAGCATTGAAGAGTTGAAGATTGAAGACATGGAGGATAGGGAAGCGGGGGTGCAAGGATTGGGTTTGGCCAATGAGAGCCCCGTGGTTGAGAAGCTGGAGAATATGGCAGATGAGAATGTAGAGGCTGAGGGAGTGCAAGTGACTGACTACACCGCGGAAGAACTAAAATCGGAGAATGTAGAGGATGACAAGACTGCAGAAGGGGAGGAAATAGCCATGGCAGAAGAGAGTGCGGAGGCAGATGACATGGTTTATTTGGTGGATGAAGGGATTGGATCAGAGGAGACGGATGTAAACATGACATATTTGGTGGAGGAAACGGAAGCAGCAGAGGAGGTTGAGGAGATGGATGTTACAGAAGAGGTGGATGAGCCAAATATAAGTAGCAGTGGGTCTAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCCGCTAGAGTGGCTTCCAGGAAGAAGGTGGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGTGATCTTAGGTTGTCCCAAGGCATACCACCCGGCCTGTATTAATCGCGATGAGGCATTCTTCCGAGCCAAGGGTCGATGGAATTGTGGTTGGCATCTCTGTAGTAACTGTGAGAAGACTGCCCATTACATGTGTTACACATGTACTTTTTCCTTGTGCAAGGGCTGCATAAAAAATGCCGTTATTTTGTGTGTTAGAGGGAATAAAGGCTTCTGCGAGACATGCATGAGATTTGTTACGTCGATTGAGAAGAATGAGCAGGGGAATACAGAAAAGGGCCAAATCGATTTTAATGACAAAAATAGCTGGGAATATCTTTTCAAGGAGTACTGGACAGATCTGAAGGGAAGCCTTTCTCTAACATTTGACGAACTTGTTCACGCCAAAAACCCATGGAAAGGATCTGAGACACTAACTAGCAGACCTGATTCACCCGGTGAGCTATGTGATGGTAATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGTTCTAAAAAGAGAAAAGCTAAGAAAAGGTCAAGATCTCAAGCAAAGGAAATGAGTTCACCTAGTATGCCAGCTATAGCTGATTCTCAAGGGCTATCCACGGATGACAATGTTGAGTGGGCATCTAAAGAGCTCTTGGAGTTTGTAATGCACATGAAGAATGGTGATAGAACTGTTTTATCTCAGTTTGACGTTCAGGCTCTTTTATTGGAATATATTAAAAGAAATAAGCTTCGTGATCCTCGACGGAAAAGTCAGATCATATGTGATTCAAGACTTGAGAATTTGTTTGGAAAGCCACGTGTGGGACATTTTGAAATGTTGAAGCTCCTAGAGTCACACTTCCTCATCAAAGAGGATGCCCAGATAAATGATCTGCATGGGAGTGTTGCTGAAACTGAATCGAGTCAGTTGGAGGCTGATGGGACTGATGGGTCAGGAAAGATTAAGAAAGAGAAAAAACGCAGGATGAGGAAAAAAGATGAGAGAGGATTGCAGTCTAACCTTGATGACTATGCAGCTATTGATATTCATAACATTAATTTAATTTACTTAAAACGTAACTTGGTGGAATACCTGATTGAAGATGAGGAGAGTTTTCATGACAAGGTTGTTGGTTCTTTTGTGAGGATAAGAATATCAGGCAGTGCACAGAAACAAGATTTATATCGGCTGGTTCAAGTTGTAGGTACAAGTAAAGCATCCGAGCCTTATAAAGTTGGTAAAAGGATGACTGATATCTTGCTAGAGATCTTGAATTTGAACAAGACAGAAGTGGTTTCAATTGATATTATCTCAAATCAAGAGTTCACAGAGGATGAGTGCAAGCGTCTCAGACAGAGCATGAAGTGTGGAATCCTTAACCGTCTGACAGTGGGTGACCTCCAGGAGAGAGCCATGTCGCTTCAAGATGCCAGAGTCAAGGATTGGATGGAGACCGAGATAGTTCGACTGAGTCATCTTCGTGATCGAGCGAGTGAGAAAGGGCGCCGAAAAGAATATCCTTTTTTTCATTATTTTAAACTACAGCTTTTGAAGACACCTGAGGAGCGGCAGCGCAGAATTGAGGAAATACCAGAAATACACGCAGACCCAAATATGGATCCAAGTCATGAATCTGAAGATGAAGATGAAGCAGATGATAAGAGACGAGAAACCTACGCCTTGTCAAGAAGCACAAGCTTTGGCAGGAGGATGAGGGAGCCAGTTTCTCCTGGAAAAGGAGGTTTGCATGTGAATGACTCCTGGAGCGGGACTAGAAACTTCTTTAACACGAATCGGGACATGAGCAGGAACTTGTCTGGCAAAGGCTTCTCTAACCAAGGGGATGATGCTATTGGTTCTGGTGAAATAATAAATGAAACTTCGTGGGGTCATGGAAGAGAGAGAGATGTTAAAAAAACAAGCAAGTGGGACAAACAGCAAGTTTCGCCTAGTTCAGAAATCACTGCTCGGAATGCCTTGTCTGGGGCCGCATCTGAGTCTTCTGCTGCTCACTCGGTAAATCCAGCAGTATCTTCATCCGTGGGGACTACACAGAATGCTGCTACAGCAAATGAATCCGAGAAGATATGGCATTATCAGGATCCTTCTGGGAAAGTGCAGGGACCGTTTTCAATGGTGCAACTGCGCAAGTGGAGTAACACAGGTTATTTTCCTACAGACTTGAGAATATGGAGAATCTCAGACCAGCAAGAGGACTCCCTACTCTTGACCGATGTCTTAGCGGGAAAGATCCCGAAGGACACTCCATTGACAAGTAACAGTTCGCAAGCACCCCCGAATTCTTCTTCATTTGTGGGTAGGCCACAGGGAGGCACTTTGCAGTCAGGTGTGGATGGTCAGATTGCTAGTAGTTCAAATTCACATACTAATCCAACTTCTTATGATCAATCTTCTGGAGGAAGATGGAAATCTCAAAATGAAGTTAGCCCTACTGGTAGACCTGTCTCGGGTTCTATAAAAGTCCCCAGATATTCAGGAGACAGGTGGGCTTCTGACCATGGCAATAAGAACTTCACTAATCTTCCTTCTCCTACTCCCAGCTCAGGAGGAACGAAGGAGCAGCCATTTCAAGTGGCTGCTTCGTTCATGGAGGCAAAATCAAAATCACTCTCAGGAACTGGTGGTGGCGGTTTGCATGGTTCTTCAGTAATGCAAGGGTCTGAAAATGACTCGCTGCGTTCACATTTGGGTCGGAATTCATCAGAAAAGGGCATGGGTTCAGGTCCTATAAATGCACTCCAAAATCATCAATCTCAGCCAGTAAGGCAATCACCTATCATTGACGATGCTTCGCTCAATCCAGCTGCAGATATTAGAAGCATTAGTGCAAATCTTCAGAGTTTGGTACAATCCATCAACAGTCGTAATCCTCCTATTGAAGCTCATGGACACGGGTCTGGCTCCATCCTGAAACGGGAAACAGATACTTCGGAGGCATGGCAAAATGCACAATCTCTCAAAGTTGAATCAAACGTTTCTTCTAGCATGCCACCAGCACAAACTCTTCACAGTCGTTGGGGGGAGATGTCGCCTGCACAAAATGCTGCTGTCACGTCGTTCAGTGCAGGAAGTTCAACATCAAGTTTTTCGTCAGCCGGTTTGTCCAGTTTTCCGTCTTCTGACCCTTGGCGATCTACGGCTCCTATTTCTAGTAACCCACAACACATTCAGTGTTCAACTCCACCCAATCTACCTTGGGGAATGGGTGCTCCAGAAGGTCAAAGTACTGTTCCACGACCGGGTTCGGAGTCTCAGAACCAAACCTGGGGGCCTATGCCATCAGGAAATCCAAACATGGGTTGGGGTCCAACAGCACCACCTCCAAATGCTACTGCTATGATGTGGGGAACTACTGCCCAAAGTTCTGGTCCTGCAGCTACAAACCCGGGTTGGATTGCACCAGGTCAAGGGCCGCCAGCTGGAAACAACATTCAAGGATGGCCAGCGCACAACCCTATGCCACCTCCGGTAAATGCAACTCCGGGATGGGTTGCTCCCAACGTTGCACCAATGCCACCTATGAATATGAATCCCAGTTGGCCCGTTCCATCTGTGAATCAGAACATGTGGGGTAATGAGCATGGCAAAAATGGGAATAGATTCTCGAACCAAAAGGATGGTGGTTCTCATGGCGGAGATCCAGGGACTGGAGATAAATCTTGGGGTATGCAACCATCTTTTGGTGGTGGTGGTGGTGGTGGTGGGAATTCTAGGTCTCCTTACAATAGAGTGCAAAAACTGTGCAAATATCATGAAAGTGGACATTGCAAGAAAGGAGGTACTTGTGATTACAGGCACAAGTAG 5367 45.16 MEAEEDDSSYHNQKSSSLYVDDGNLDVKCDTNREELHSNEQQHCVSKSSIIETDFSPNTVVESLPPRDAILGMRFLLWVRERDSRGEGFSQHYSRFGEDSVKLEIEPDIANTGLLKQRAFDDVKMNTGVTEEEKALSEFAEGELLPEMVFAGVAENQVEGNVLMANFSEDTVVDGSAGCVETTETTCLSDVLAEETLAETTLFVQDVDVTDATNLVEKTEVEEHADDANDSKDTEVPKQENFAVEKMELGVRVQLEENSELKVSLVDGAVEGRTENLADRTGETSKMENASSTTNEVGLTHFAVEINETVNIGNAEDKTIEMDGMCMEDKATDVGMMENLADETPEIKGVDVADYSIEELKIEDMEDREAGVQGLGLANESPVVEKLENMADENVEAEGVQVTDYTAEELKSENVEDDKTAEGEEIAMAEESAEADDMVYLVDEGIGSEETDVNMTYLVEETEAAEEVEEMDVTEEVDEPNISSSGSKRKRGKNSKAPARVASRKKVEEDVCFICFDGVILGCPKAYHPACINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKGCIKNAVILCVRGNKGFCETCMRFVTSIEKNEQGNTEKGQIDFNDKNSWEYLFKEYWTDLKGSLSLTFDELVHAKNPWKGSETLTSRPDSPGELCDGNVDGGSDLDVSENEESGSSKKRKAKKRSRSQAKEMSSPSMPAIADSQGLSTDDNVEWASKELLEFVMHMKNGDRTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLENLFGKPRVGHFEMLKLLESHFLIKEDAQINDLHGSVAETESSQLEADGTDGSGKIKKEKKRRMRKKDERGLQSNLDDYAAIDIHNINLIYLKRNLVEYLIEDEESFHDKVVGSFVRIRISGSAQKQDLYRLVQVVGTSKASEPYKVGKRMTDILLEILNLNKTEVVSIDIISNQEFTEDECKRLRQSMKCGILNRLTVGDLQERAMSLQDARVKDWMETEIVRLSHLRDRASEKGRRKEYPFFHYFKLQLLKTPEERQRRIEEIPEIHADPNMDPSHESEDEDEADDKRRETYALSRSTSFGRRMREPVSPGKGGLHVNDSWSGTRNFFNTNRDMSRNLSGKGFSNQGDDAIGSGEIINETSWGHGRERDVKKTSKWDKQQVSPSSEITARNALSGAASESSAAHSVNPAVSSSVGTTQNAATANESEKIWHYQDPSGKVQGPFSMVQLRKWSNTGYFPTDLRIWRISDQQEDSLLLTDVLAGKIPKDTPLTSNSSQAPPNSSSFVGRPQGGTLQSGVDGQIASSSNSHTNPTSYDQSSGGRWKSQNEVSPTGRPVSGSIKVPRYSGDRWASDHGNKNFTNLPSPTPSSGGTKEQPFQVAASFMEAKSKSLSGTGGGGLHGSSVMQGSENDSLRSHLGRNSSEKGMGSGPINALQNHQSQPVRQSPIIDDASLNPAADIRSISANLQSLVQSINSRNPPIEAHGHGSGSILKRETDTSEAWQNAQSLKVESNVSSSMPPAQTLHSRWGEMSPAQNAAVTSFSAGSSTSSFSSAGLSSFPSSDPWRSTAPISSNPQHIQCSTPPNLPWGMGAPEGQSTVPRPGSESQNQTWGPMPSGNPNMGWGPTAPPPNATAMMWGTTAQSSGPAATNPGWIAPGQGPPAGNNIQGWPAHNPMPPPVNATPGWVAPNVAPMPPMNMNPSWPVPSVNQNMWGNEHGKNGNRFSNQKDGGSHGGDPGTGDKSWGMQPSFGGGGGGGGNSRSPYNRVQKLCKYHESGHCKKGGTCDYRHK 1788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5763078 5775592 + PI0020747.1 Cmetu01g2730 348004

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu01g2730 1788 CDD Bbox1 551 576 - -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 702 719 - -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1158 1203 - -
Cmetu01g2730 1788 SUPERFAMILY SWIB/MDM2 domain 724 802 IPR036885 -
Cmetu01g2730 1788 FunFam Zinc finger CCCH domain-containing protein 19 861 990 - -
Cmetu01g2730 1788 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 499 597 IPR013083 -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1142 1157 - -
Cmetu01g2730 1788 CDD GYF 1208 1263 IPR003169 GO:0005515
Cmetu01g2730 1788 SMART rtf1 860 970 IPR004343 GO:0003677
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 651 719 - -
Cmetu01g2730 1788 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 421 1788 - -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1044 1102 - -
Cmetu01g2730 1788 Gene3D - 1210 1268 IPR035445 -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1 24 - -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1119 1203 - -
Cmetu01g2730 1788 Pfam Plus-3 domain 865 969 IPR004343 GO:0003677
Cmetu01g2730 1788 SMART gyf_5 1209 1264 IPR003169 GO:0005515
Cmetu01g2730 1788 Pfam GYF domain 1211 1251 IPR003169 GO:0005515
Cmetu01g2730 1788 SUPERFAMILY Plus3-like 861 991 IPR036128 GO:0003677
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1711 1727 - -
Cmetu01g2730 1788 CDD PHD5_NSD 511 550 - -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1711 1762 - -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1475 1498 - -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 464 499 - -
Cmetu01g2730 1788 Gene3D SWIB/MDM2 domain 715 810 IPR036885 -
Cmetu01g2730 1788 ProSiteProfiles Plus3 domain profile. 860 993 IPR004343 GO:0003677
Cmetu01g2730 1788 SUPERFAMILY GYF domain 1200 1261 IPR035445 -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1353 1375 - -
Cmetu01g2730 1788 SMART swib_2 728 806 IPR019835 -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1543 1582 - -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1598 1615 - -
Cmetu01g2730 1788 Gene3D - 861 991 IPR036128 GO:0003677
Cmetu01g2730 1788 CDD SWIB-MDM2_like 726 801 - -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1268 1334 - -
Cmetu01g2730 1788 FunFam Zinc finger CCCH domain-containing protein 19 713 808 - -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1389 1444 - -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1543 1665 - -
Cmetu01g2730 1788 ProSiteProfiles SWIB/MDM2 domain profile. 720 803 IPR003121 -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1632 1648 - -
Cmetu01g2730 1788 ProSiteProfiles GYF domain profile. 1208 1262 IPR003169 GO:0005515
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 1268 1375 - -
Cmetu01g2730 1788 Pfam SWIB/MDM2 domain 728 801 IPR003121 -
Cmetu01g2730 1788 ProSiteProfiles Zinc finger C3H1-type profile. 1763 1788 IPR000571 GO:0046872
Cmetu01g2730 1788 FunFam Zinc finger CCCH domain-containing protein 19 501 595 - -
Cmetu01g2730 1788 MobiDBLite consensus disorder prediction 818 848 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu01g2730 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g2730 Cmetu-Chr1:5763078 Cmetu07g1600 Cmetu-Chr7:4344998 1.10E-152 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g34 . . . . . . . . . . . . . . Sed05g2290 . . Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g38 . . . . . . . . Cmo19g00701 . . . . . Sed05g2290 Cpe04g00103 Cpe15g00561 Bhi05g01262 Tan02g0757 Cmetu01g2730 . . . . Cla02g00488 Cam02g0497 Cec02g0498 Cco02g0503 Clacu02g0501 Cmu02g0496 Cre02g0829 Cone12ag1185 Cone8ag1230 . . . Csa07g00034 . Cme01g01347 Blo04g00538 . . . Bpe15g00843 . . . . . . . . . Car19g00533 . . . . . . . . . Cla02g01127 Cam02g1202 Cec02g1205 Cco02g1255 Clacu02g1191 Cmu02g1153 Cre02g1463 . . Chy01g00747 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007589 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7380 PF03126 Plus-3 1.40E-24 No_clan Cmetu TR