Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0003 ATGGCGGCCATTTCCTTAGCTTCCGTTTCCACTTCTTCTAAGCTTGTTTTCCCCCACCCTTCTTCTTCTTCTTCTACTACTTCTTCTTCTTCCCTTTCTTCTTCCCTCCTCTCCAAACCCTCTTCCAACCTTTCTTCCTCTTTCTTGAACCCTTCTTCAATTCGTCCTCTCTCCTTCTCTTCCCCTTCTGTAAACCGTCCTCGTTCCTTCACAATTCGTGCCGCTCGTGGGAAATTTGAGAGGAAGAAACCCCATGTCAATATTGGCACAATTGGCCATCAAAGCCCAAAGAAATACGATGAAATTGACGCTGCCCCAGAAGAACGAGCTCGTGGTATTACGATTAATACAGCTACTGTTGAGTACGAGACTGAGAGTCGACATTATGCTCATGTTGATTGTCCTGGACATGCTGATTATGTCAAGAATATGATTACTGGTGCTGCGCAAATGGATGGAGCGATTTTGGTTGTTTCTGGTGCTGATGGTCCAATGCCACAGACCAAGGAGCATATTTTGTTGGCTAAGCAAGTGGGTGTTCCTAATATGGTGGTGTTTTTGAACAAGAAGGATCAAGTTGATGATGAGGAGCTTTTGGAGCTTGTGGAGTTGGAGATGCGTGAGTTGCTTTCTTCTTATGAATTCCCAGGTGATGATGTACCAATTATTGCTGGTTCTGCTTTGTTAGCTTTGGAAGCTTTAATGGCTAACAATAATATAGCTAGAGGTGAAAATGAATGGGTGGATAAAATTTTTGAACTTATGGATGCTGTTGATAGTTATATACCAATACCTGAAAGACAAACAGATCTTCCATTTTTGCTTGCTGTTGAAGATGTGTTCTCTATTACTGGTCGTGGTACTGTTGCTACAGGGCGTGTTGAAAGAGGAACCGTTAGAGTGGGAGAGACAGTGGATATTGTGGGATTGAGGGAAACTAGAAACACAACTGTAACAGGGGTGGAAATGTTTCAAAAAATTCTTGATGAGGCTTTGGCTGGGGATAATGTTGGTTGTTGCTTCGAGGTCCAAGCCTGGCACTATCACCCACATACCAAGTTTAGTGCAGTTGTGTATGTGTTGAAGAAGGAAGAGGGTGGTAGACATTCACCCTTTTTCGCTGGTTACAGACCGCAATTCTATATGAGGACGACTGATGTCACTGGCAAGGTGTCTTCAATTATGAATGACAAGGACGAGGAGTCGAAAATGGTTATGCCGGGAGACCGAGTGAAAATGGTTGTGGAACTGATTATGCCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATCAGAGAAGGTGGAAAGACTGTTGGTGCTGGTGTGATTCAATCAATTATCGAGTGA 1347 43.58 MAAISLASVSTSSKLVFPHPSSSSSTTSSSSLSSSLLSKPSSNLSSSFLNPSSIRPLSFSSPSVNRPRSFTIRAARGKFERKKPHVNIGTIGHQSPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKKDQVDDEELLELVELEMRELLSSYEFPGDDVPIIAGSALLALEALMANNNIARGENEWVDKIFELMDAVDSYIPIPERQTDLPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVDIVGLRETRNTTVTGVEMFQKILDEALAGDNVGCCFEVQAWHYHPHTKFSAVVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVSSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24624561 24625994 + PI0009499.1 Cmetu02g0003 348015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0003 448 FunFam Elongation factor Tu 387 447 - -
Cmetu02g0003 448 NCBIfam elongation factor Tu 96 448 IPR004541 GO:0003746|GO:0005525|GO:0006414
Cmetu02g0003 448 PANTHER ELONGATION FACTOR TU-RELATED 91 447 - -
Cmetu02g0003 448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 281 IPR027417 -
Cmetu02g0003 448 CDD EFTU_III 349 443 - -
Cmetu02g0003 448 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 103 118 IPR031157 -
Cmetu02g0003 448 Gene3D Translation factors 350 448 - -
Cmetu02g0003 448 Gene3D - 75 265 IPR027417 -
Cmetu02g0003 448 FunFam Elongation factor Tu 268 383 - -
Cmetu02g0003 448 Pfam Elongation factor Tu domain 2 287 339 IPR004161 GO:0005525
Cmetu02g0003 448 FunFam Elongation factor Tu 94 265 - -
Cmetu02g0003 448 Pfam Elongation factor Tu C-terminal domain 349 446 IPR004160 -
Cmetu02g0003 448 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 348 447 IPR009001 -
Cmetu02g0003 448 MobiDBLite consensus disorder prediction 1 45 - -
Cmetu02g0003 448 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 103 266 IPR000795 GO:0003924|GO:0005525
Cmetu02g0003 448 Pfam Elongation factor Tu GTP binding domain 95 263 IPR000795 GO:0003924|GO:0005525
Cmetu02g0003 448 CDD EFTU_II 273 339 IPR033720 -
Cmetu02g0003 448 Gene3D Translation factors 269 348 - -
Cmetu02g0003 448 SUPERFAMILY Translation proteins 267 341 IPR009000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0003 K02358 - - csv:101202988 724.931
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0314 Cmetu-Chr1:24173279 Cmetu02g0003 Cmetu-Chr2:24624561 1.20E-118 dispersed
Cmetu02g0003 Cmetu-Chr2:24624561 Cmetu12g0241 Cmetu-Chr12:1432536 3.30E-21 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g834 Blo04g00717 . . . . . Bma06g00224 . . . Cma10g00090 Cma11g00064 Car10g00079 Car11g00058 Sed08g0074 . Cpe04g01586 Bhi02g00598 Tan09g2310 Cmetu02g0003 . . . . Cla06g01704 Cam06g1892 Cec06g1941 Cco06g1945 Clacu06g1848 Cmu06g1789 Cre06g2604 Cone2ag0932 Cone16ag0071 . . . . . . . . . . . Bpe15g00654 Bma03g00766 . . Cmo10g00093 Cmo11g00067 . . . . . Cpe18g00872 . . . . . . . . . . . . . . Lsi06g01592 . . Cme02g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006341 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 38