Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0065 ATGCCTTACTCGTCATCCTTCTTCAACTCCTATTTCAGGAGGACTTCCATGTCCATCTCCTTCAAACCCACTTCTCCTTTTCCATATTCAACCCGTTTCACACCTTGGCTTCCCCATCTTTTCACCCGGAGGAACATTTCAATGGGGTTTGTCGACTTGCACCACTCCCGTCCGGCCTCTGTTTCTGGTGTTGTTCGTTGTTCCACCACCCAATCCAAGTGGGTTGAAGTTTCCTTGAAGGAGAAACAACAGGACCATGTTAAGGGTTTCAAGCAAAGGAATGTTGCGTTCCCCTTTTGGCAGCATCAGTCCTGCTATAATTATGGTCGGTTTGCGTATGACGATGTTTCTAGTGATGAATCTGATGTCGAATTTGGCTCTCCCCAGGCCCAAAGGAGTTCATCAACCCTTGATAACGTAGATGAGTGGAGACGGAAGTTAACTATGCTTCTACGAAACAATGATGAAGTAGAAGTAGTGTCAAGGGAGAAAAAGGATAGACGTGACTTTGAGCAACTTTCAGCATTGGCAACCCGAATGAGTTTGCATAGCCGTCAATATTCCAGAGTTGTTGTATTTAGTAAAGATCCCCTGCCGAATTATAGGCCGGACCTGGATGATAAGCGACCACAGAGAGAGGTGGTCTTACCTTTTGGTGTCCAAAGGGAAGTTGAAGGTCATCTAAGATTGTACCAATCTTCTCACAAGTTTGTGTCAAAAGGATGTTTTTCAAACAGTTACTTCCCAAAATCTGGCATTGCTGAAAACGGTGCTAACAATAATGGACTGTTTGAGCACCAGGAACCTTTGACAACAAGAAGCGTTGTCTTGGAGAAACGTCTTTGCTTCAAAAGTTTGCAACTGAGGAATGAGCAGCGAGACTGGCAGGAATCTCTTGAGGGCCAAAAAATGATAGAATTTCGCAAGAGTCTCCCTGCATTCAAAGAGAGAGAAGCATTGTTAAAGGCCATTTCAGAAAATCAGGTAGTTGTTGTCTCAGGTGAAACTGGTTGTGGCAAAACCACACAGCTTCCTCAGTATATTTTAGAATCTGAGATTGAAGCTGGTCGTGGAGCTTTTTGTAGTATTATCTGTACTCAGCCTAGACGTATTTCTGCCATGACTGTTTCTGAAAGAGTTGCCGCAGAACGTGGAGAGAAACTGGGAGAGTCCGTTGGTTATAAGGTTCGGCTAGAGGGTATAAAAGGAAGGGATACTCGTCTTCTCTTTTGCACCACTGGTGTACTATTGAGAAGATTGCTTGTTGACAGAAATTTGAAAGGTGTAACTCATGTTATTGTTGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTTGTTATTGTTCTGAAAGATCTTCTTCCTCGACGGCCGGATTTGAGGTTGATCTTAATGAGCGCAACTCTAAATGCCGAGCTTTTCTCTTCTTATTTTGGTGGTGCTCCAACAATGCATATCCCTGGTTTTACATACCCAGTTCGTGCACACTTTTTGGAGAATATTCTTGAGATTACTGGCTATCGATTAACTCCGTATAATCAAATTGATGATTATGGTCAAGAAAAGGCGTGGAAAATGCAAAGACAAGCTCAAGCTGTAAAGAAAAGGAAGACCCAGATTGCTTCATCTGTGGAGGATGCCTTTGAGGCTGCTAACTTTTCAGCATACAGTCCTTGGACTCGGGAGTCTCTATCCTGTTGGAATCCTGATTCAATTGGTTTCAATCTCATTGAGCATGTCCTCTCTTACATTGTCAAGAAGGAGAGGCCAGGTGCTATATTAGTTTTTATGACCGGTTGGGATGATATAAACTCTTTAAAGGACCAGCTCCAGTCTCACCCTTTATTAGGGGATCCTAGCAGAGTCTTGCTCCTTGCATGTCATGGTTCGATGGCCAGCTCTGAGCAGAAATTGATATTTGATAAACCTGAAGAAGGAGTTAGGAAAATAGTCCTAGCTACAAACATGGCAGAGACTAGCATCACCATCAATGATGTGGTTTTTGTTGTTGACTGTGGAAAAGCAAAGGAGACATCCTATGATGCACTAAATAACACTCCTTGTTTGCTTCCATCCTGGATCTCCAAGGCTGCTGCACGACAAGGCTGGTCGTGTTCAACTGGCGAGTGTTACCATCTCTATCCCAGATGCGTATACGATGCTTTTGCTGATTATCAACTGCCAGAACTTTTAAGGACCCCGTTGCAGTCTTTGTGTTTGCAAATCAAGAGTCTACAACTTGGAAGTATATCAGAGTTCCTATCAAATGCATTGCAGCCGCCAGAGCCTTTATCAGTTCAAAATGCCATAGACTATTTGAAGACAATTGGAGCTCTGGATAAGAAAGAAAATCTGACAGTTCTTGGGAAACACTTGTCAGCTCTTCCAGTTGAGCCTAAACTAGGGAAAATGCTTATATTAGGAGCTATTTTCAACTGCCTTGATCCAATTATGACTATTGTTGCTGGTCTTAGTGTCAGAGATCCTTTCCTTATGCCATCTGATAAAAAGGATTTAGCCGAATCAGCAAAAGCACACTTTGCTGCACGTGACTGCAGTGATCATCTTGCCTTAGTTCGAGCTTATCAGGGTTGGAGAGATGCTGAAAAACAGCAATCCGGTTATGAGTATTGTTGGAGAAACTTTCTCTCTATGCAAACTCTTAGAGCCATTGACTCTCTGAGGAAGCAGTTCATCTTTTTGCTGAAGGACACTGGTCTAGTGAATTATGATTCAGAAAAATGTAACATCTCAAACCACGGCGAGCACTTAATCCGTGCAGTCATCTGTGCTGGATTGTTCCCCGGAATTTGCTCTGTTGTGAACAAAGAGAAATCAGTAGCTCTAAAAACAATGGAAGATGGTCAGGTTATGCTATATTCGAACTCAGTTAATTCTGGCTATCCAAAAATTCCCTACCCTTGGCTGGTGTTTAATGAAAAGGTGAAAGTCAATTCAGTCTTTCTTCGGGATTCTACTGGGGTGTCTGATTCTATCCTGCTTTTATTTGGAGGAAATGTTTCTAGAGGAGGACTTGATGGTCACCTCAAAATGCTGGATGGTTATTTGGAGTTTTTCATGAAACCTGAATTGGCCGAGACTTATTTGAGCCTTAAAGGGGAGCTCGATGAGCTTGTTCATCAAAAACTTTTGAATCCAAAGTTAGATATGGAGCCACACAATGAGCTACTATCAGCGATAAGGTTGTTGATTTCAGAGGATCGCTGTGAGGGTCGGTTTGTCTATGGTCGACATATGCCTGTACCATCAAAAAAAGCAATGACCGACAGTCTACCTGGACAGAAACATGGTGATGGAGGTGGGGGTGATAATTCCAAGAATCAGCTTCAGACCCTACTTCTGAGAGCTGGACATGAAACACCAAGATACAAAACTAAGCAATTAAGAAACAATCAGTTCCGCTCCACTGTTATTTTCAACGGATTGAACTTTGTGGGCCAACCTTGTGGCAGCAAGAAACTGGCGGAAAAAGATGCAGCTGCTGAGGCTCTTCTATGGCTACAGGGTGAGACACATTCATCTTCCCAAGCTATCGATCACTTGATTGGACAGATAAAAGAGAACAAAAGCAAAAAGATGATAACTGTGAATGACTGTTCTACTCGATCATCTTTGAAGTTGTGA 3648 42.65 MPYSSSFFNSYFRRTSMSISFKPTSPFPYSTRFTPWLPHLFTRRNISMGFVDLHHSRPASVSGVVRCSTTQSKWVEVSLKEKQQDHVKGFKQRNVAFPFWQHQSCYNYGRFAYDDVSSDESDVEFGSPQAQRSSSTLDNVDEWRRKLTMLLRNNDEVEVVSREKKDRRDFEQLSALATRMSLHSRQYSRVVVFSKDPLPNYRPDLDDKRPQREVVLPFGVQREVEGHLRLYQSSHKFVSKGCFSNSYFPKSGIAENGANNNGLFEHQEPLTTRSVVLEKRLCFKSLQLRNEQRDWQESLEGQKMIEFRKSLPAFKEREALLKAISENQVVVVSGETGCGKTTQLPQYILESEIEAGRGAFCSIICTQPRRISAMTVSERVAAERGEKLGESVGYKVRLEGIKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLVIVLKDLLPRRPDLRLILMSATLNAELFSSYFGGAPTMHIPGFTYPVRAHFLENILEITGYRLTPYNQIDDYGQEKAWKMQRQAQAVKKRKTQIASSVEDAFEAANFSAYSPWTRESLSCWNPDSIGFNLIEHVLSYIVKKERPGAILVFMTGWDDINSLKDQLQSHPLLGDPSRVLLLACHGSMASSEQKLIFDKPEEGVRKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQGWSCSTGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSNALQPPEPLSVQNAIDYLKTIGALDKKENLTVLGKHLSALPVEPKLGKMLILGAIFNCLDPIMTIVAGLSVRDPFLMPSDKKDLAESAKAHFAARDCSDHLALVRAYQGWRDAEKQQSGYEYCWRNFLSMQTLRAIDSLRKQFIFLLKDTGLVNYDSEKCNISNHGEHLIRAVICAGLFPGICSVVNKEKSVALKTMEDGQVMLYSNSVNSGYPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSILLLFGGNVSRGGLDGHLKMLDGYLEFFMKPELAETYLSLKGELDELVHQKLLNPKLDMEPHNELLSAIRLLISEDRCEGRFVYGRHMPVPSKKAMTDSLPGQKHGDGGGGDNSKNQLQTLLLRAGHETPRYKTKQLRNNQFRSTVIFNGLNFVGQPCGSKKLAEKDAAAEALLWLQGETHSSSQAIDHLIGQIKENKSKKMITVNDCSTRSSLKL 1215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22537102 22544620 - PI0025310.1 Cmetu02g0065 348077

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0065 1215 CDD SF2_C_RHA 557 715 - -
Cmetu02g0065 1215 FunFam DExH-box ATP-dependent RNA helicase DExH3 264 489 - -
Cmetu02g0065 1215 Gene3D - 272 489 IPR027417 -
Cmetu02g0065 1215 Pfam Double-stranded RNA binding motif 1113 1175 IPR014720 -
Cmetu02g0065 1215 FunFam Putative ATP-dependent RNA helicase DHX36 749 853 - -
Cmetu02g0065 1215 Gene3D - 1102 1180 - -
Cmetu02g0065 1215 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 577 747 IPR001650 -
Cmetu02g0065 1215 SMART DRBM_3 1113 1176 IPR014720 -
Cmetu02g0065 1215 SMART ultradead3 309 502 IPR014001 -
Cmetu02g0065 1215 CDD DEXHc_RHA-like 327 487 - -
Cmetu02g0065 1215 Pfam Helicase conserved C-terminal domain 578 678 IPR001650 -
Cmetu02g0065 1215 Pfam DEAD/DEAH box helicase 320 472 IPR011545 GO:0003676|GO:0005524
Cmetu02g0065 1215 FunFam DExH-box ATP-dependent RNA helicase DExH3 573 725 - -
Cmetu02g0065 1215 Gene3D - 749 853 - -
Cmetu02g0065 1215 SMART ha2_5 769 860 IPR007502 GO:0004386
Cmetu02g0065 1215 MobiDBLite consensus disorder prediction 1092 1115 - -
Cmetu02g0065 1215 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 321 488 IPR014001 -
Cmetu02g0065 1215 PANTHER ATP-DEPENDENT RNA HELICASE 240 1044 - -
Cmetu02g0065 1215 SUPERFAMILY dsRNA-binding domain-like 1107 1177 - -
Cmetu02g0065 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 883 IPR027417 -
Cmetu02g0065 1215 Gene3D - 572 725 IPR027417 -
Cmetu02g0065 1215 SMART helicmild6 605 703 IPR001650 -
Cmetu02g0065 1215 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 926 1008 IPR011709 -
Cmetu02g0065 1215 Pfam Helicase associated domain (HA2) 770 843 IPR007502 GO:0004386
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0065 K14442 - - csv:101211075 2189.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0065 Cmetu-Chr2:22537102 Cmetu04g2020 Cmetu-Chr4:5703347 2.70E-203 dispersed
Cmetu02g0065 Cmetu-Chr2:22537102 Cmetu02g0469 Cmetu-Chr2:22548596 0.00E+00 tandem
Cmetu10g0297 Cmetu-Chr10:20846924 Cmetu02g0065 Cmetu-Chr2:22537102 0.00E+00 transposed
Cmetu10g1595 Cmetu-Chr10:20655489 Cmetu02g0065 Cmetu-Chr2:22537102 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g379 . . . . . . . . Cmo04g01553 Cmo18g00996 . Cma18g00989 Car04g01538 Car18g00910 Sed08g0382 Cpe09g00328 Cpe01g01321 Bhi07g01273 Tan04g0802 Cmetu02g0065 Lac13g0540 Hepe01g1156 . . Cla05g02265 Cam05g2435 Cec05g2454 Cco05g2498 Clacu05g2426 Cmu05g2292 Cre05g2409 Cone13ag0794 Cone19ag0798 . . Lsi04g00213 Csa05g02653 Chy10g01185 Cme10g00219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001665 2 2 2 3 2 2 3 2 2 2 2 2 3 2 3 3 2 3 3 2 2 1 2 2 2 2 2 6 2 2 70