Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0079 ATGGAATCGGACGAAGAAGATTTCGTTTTCTATGGAACTCCAATTGAGCGGGAGGAAGAGATCAACAGCCGTAAAAAGAAATCTGTGGCTGACGCTTCGGGTACCATGCGAACCCTCCCTCACTGGAAACAAGAGGTTAGAGATGAGGAAGGGCGCAGAAGATTTCATGGGGCATTCACTGGAGGATTTTCTGCTGGCCATTACAATACAGTGGGCTCGAAAGAAGGTTGGACTCCACAGTCGTTTACGTCGTCCCGAAAGAATCGAGCTGAAGTCAAGCAGCAAAACATTTTAAATTTCTTAGATGAAGATGAAAAAGCTGAATTGGAAGGCCGAGGCCTGGGGACATCTTCTCAGTTTGATACATTTGGTTTCACAGCAGTAGAGCTTGCTCGTAAACAAGCCGACAAGGAGCAACAACAGAGGCCGTCTGCTATTCCTGGACCTGTTCCTGATGAATTAATTGTTCCAGCTGCAGAATCCATAGGTGTGAAGTTACTATTAAAGATGGGATGGCGCCATGGACGTGCAATAAGGACTCACGAGCTAATTCCCGTTATGGTATATTTTTTCTTATTCTATCAGAAGATTTATTGCATGCACATCTATGCTCGAAGGGATGCACGAAAAGCATTTCTAGCATTTTCAACGGGTGATGTCAAATCGGAAATCCCCAATTCTGAACCATTTCAGGAGGATGATGATATTGTTTCTCCTCAACCTGCCAAGGGTGATGTTTCGTCTTCTCAAAGCACACCAGTTTATGTGATCAACCCAAAACAGGATTTGCACGGTTTAGGTTTTGATCCTTACAAGCATGCACCAGAGTTTAGGGAAAAGAAAAGAGCGCGCACAGCTGGGAATCAGGAAGGTCACAAAAAAGTTTTCTCCACGAAGAATAATCTTTTTGGCTTTAGGACTGAGAGGATAGCTTCTGGCTTTGGCATTGGTGCGCTTGAAGAACTTGATGTTGAAGATGAGGATGTTTATACCTCAGGTTATGAGTTCGAGGAAACATATGTACAAGAAGAGGATGAGCCTCCTTCTAAGATGATCACAGATGGCAAACAAAAGTTGATTGGAAGAAAAGTTGAGGGTGTCTTGCTTGGATTTAGAATTGCTTCGAAATCTGACTACCAGATGGAAAGGTTTGATCCTCCTGTAATACCTAAGGACTTTATACCCCACCACAAATTTGCAGGGCCTCTCATTGGTGGCTACAAGCTTGCTGACACCCCTCCTGTTGAGGTTCCTCCTCCTGAGGATAATAATCTGAAACTTCTAATTGAAGGGGTGGCAACTTTGGTTGCTCGCTGTGGAAAACTATTTGAGGATCTCTCTAGAGAAAAAAATAAGTCAAATCCATTATTTAGTTTTCTTAATGGAGGAACTGGCCAGGAATATTATTCAAGGAAGTTATGGGAGGAGCAACTGAAGCGCGTGGACCAACCTAAGCCTCAATTTGATGATAAATTGTCCCCAAGCCTGGAGAAGATGACAGCCGAAAGTCGTGGAAAAATCCTTGGTGAAAAGCCTTTGGCGAGAAGCGCTAAAGAGTTAAATCCACCCGCAGCTTCTGATGGTGTGCATGTCCAATACAATCTTTCGGATACATTTACTAAACCTACATCATCGGGTGGGATGCCAGAGGTTGTCAAACCTTTCAAGGATGATCCAGCTAAGCAAGAAAGATTTGAGAAGTTTTTAAAGGAAAAGTATAAAGGAGGCCTGCGCACTGGTGCTCCTGTTGGAGCTATTAATATGTCAGAAGCAGCTCGTGCACGTGAACGCTTGGACTTTGAGGCTGCTGCAGAAGCGATTGAGAAAGGGAAAGGATTGAAAGAAGCTAAGCTCTCTGCTGAGCACTTTGTGGAATTTTTAGCCACTGGAGGAATGCAGTTTACCACTGGTGGTGTAGAGGAAGTCAAAGATACAAAGATAGAAGGTTTAATGATGGAGAAAATGTTCCCAAAGCGGGAAGAATATCAGTGGCGCCCTGCTCCTATTCTGTGCAAGCGGTTTGATCTCATTGATCCCTACATGGGGAAGCCACCACCAGCACCTAGAATGAGGAGCAAGTTGGATACACTTATTTTCACATCAAATTCTGTCAAATCAACAAAGGTTGAAGAATCTTTAACCTCAATGCCTTCTTCATTACCTCAATTGAATGCTGAAGAAAAAGATGCGGATGCATCTGAAAGTGTAAATGAAAAAGTAGAAGTTGAATGTGTTGATCGGCCTGTTGATCTATATAAGGCTATTTTCTCTGATGAATCGGATGATGAAGAGAGTACATCAACTCTCAAGCAAGCTGAGGATCCTAAAAAGAAAGTTGAAGTGGCTAATACAACACTTAACCGTTTGATTGCGGGTGACTTTCTGGAATCTTTGGGTAAAGAACTGGGCTTGGAAGTGCCCCCAGATCTACCTCCATCAAAGAAAGGCCAAACCGCAGCTTCTCAGAATGAAGCTGTACCTGTTGGTGAACAGAATATCAATATCCTTTCAGTTGAAGATAAGCCTTATCCCACCCCATCGTCCACTGGGATTCTATCGGACCATCGAATGACAGGCACTGCGGAACATGATCTAAATAGCAGAAAAGAAGACAATGAACTCAATCATAACTCAACTGGAAGTGGTGGTAAAATTATGGAATCCAGTTCTTCCAAGAAAACTTCAGGTAAAGTTTATGAAGAAAAGATGTATCAGGACAAGGGGGATAGGAAGGCTAACAACAGGCGAGTTGACATTCATCGTGATTGTAGCGGCAGCTCATCATCGGAAGATGAAAAGAGAAGAAAACGTTCAAGGAGGCGCAGATATAAAAGTAGTGACTCAGAGGATAGTGCATCAAGTGATGATTATCATACGAAAGAGCACTCTAAATCACGAGATAGAAAAAAAGGATCTTCTCAAGAAAAGAAGAGCCGAAGAAAACACTCAAAACATCACAAGCACAGACATAGAGATTCTTCCCCCAGAGACCATCGCCGCTCGGGAAAAGATCGTACAGTATCTGAGAGAGAGAAACATAGATGGAGAGATTGA 3054 43.09 MESDEEDFVFYGTPIEREEEINSRKKKSVADASGTMRTLPHWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWTPQSFTSSRKNRAEVKQQNILNFLDEDEKAELEGRGLGTSSQFDTFGFTAVELARKQADKEQQQRPSAIPGPVPDELIVPAAESIGVKLLLKMGWRHGRAIRTHELIPVMVYFFLFYQKIYCMHIYARRDARKAFLAFSTGDVKSEIPNSEPFQEDDDIVSPQPAKGDVSSSQSTPVYVINPKQDLHGLGFDPYKHAPEFREKKRARTAGNQEGHKKVFSTKNNLFGFRTERIASGFGIGALEELDVEDEDVYTSGYEFEETYVQEEDEPPSKMITDGKQKLIGRKVEGVLLGFRIASKSDYQMERFDPPVIPKDFIPHHKFAGPLIGGYKLADTPPVEVPPPEDNNLKLLIEGVATLVARCGKLFEDLSREKNKSNPLFSFLNGGTGQEYYSRKLWEEQLKRVDQPKPQFDDKLSPSLEKMTAESRGKILGEKPLARSAKELNPPAASDGVHVQYNLSDTFTKPTSSGGMPEVVKPFKDDPAKQERFEKFLKEKYKGGLRTGAPVGAINMSEAARARERLDFEAAAEAIEKGKGLKEAKLSAEHFVEFLATGGMQFTTGGVEEVKDTKIEGLMMEKMFPKREEYQWRPAPILCKRFDLIDPYMGKPPPAPRMRSKLDTLIFTSNSVKSTKVEESLTSMPSSLPQLNAEEKDADASESVNEKVEVECVDRPVDLYKAIFSDESDDEESTSTLKQAEDPKKKVEVANTTLNRLIAGDFLESLGKELGLEVPPDLPPSKKGQTAASQNEAVPVGEQNINILSVEDKPYPTPSSTGILSDHRMTGTAEHDLNSRKEDNELNHNSTGSGGKIMESSSSKKTSGKVYEEKMYQDKGDRKANNRRVDIHRDCSGSSSSEDEKRRKRSRRRRYKSSDSEDSASSDDYHTKEHSKSRDRKKGSSQEKKSRRKHSKHHKHRHRDSSPRDHRRSGKDRTVSEREKHRWRD 1017
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22977714 22987480 + PI0019924.1 Cmetu02g0079 348091

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 973 996 - -
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 943 972 - -
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 815 830 - -
Cmetu02g0079 1017 Pfam Surp module 428 475 IPR000061 GO:0003723|GO:0006396
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 857 875 - -
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 841 855 - -
Cmetu02g0079 1017 SUPERFAMILY Surp module (SWAP domain) 408 478 IPR035967 GO:0003723|GO:0006396
Cmetu02g0079 1017 FunFam G patch domain-containing protein TGH 392 482 - -
Cmetu02g0079 1017 Gene3D Surp module 407 480 IPR035967 GO:0003723|GO:0006396
Cmetu02g0079 1017 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 1013 - -
Cmetu02g0079 1017 Pfam Protein of unknown function (DUF1604) 39 119 IPR011666 GO:0006397
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 67 89 - -
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 803 1017 - -
Cmetu02g0079 1017 ProSiteProfiles SURP motif repeat profile. 428 472 IPR000061 GO:0003723|GO:0006396
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 709 739 - -
Cmetu02g0079 1017 Coils Coil 723 743 - -
Cmetu02g0079 1017 SMART surpneu2 426 478 IPR000061 GO:0003723|GO:0006396
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 876 893 - -
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 71 89 - -
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 756 775 - -
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 224 251 - -
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 894 934 - -
Cmetu02g0079 1017 MobiDBLite consensus disorder prediction 997 1017 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0079 K13123 - - csv:101222702 1774.21
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g386 . . . Bda15g00649 Bpe12g00504 . . . . . . . . . Sed12g2048 . . Bhi02g00020 Tan09g1963 Cmetu02g0079 . . . . Cla06g01499 Cam06g1652 Cec06g1712 Cco06g1710 Clacu06g1618 Cmu06g1567 Cre06g2379 . . Cone13ag0009 Cone19ag0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00349 . Cme02g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33