Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0207 ATGGATCCAGAAACCCTCTCTGCCACTTTGTTCAAATGGGAGCCTCGAGAAATGGTGGGAGGCGGCAGCGGCGCACCCCTCCCAGCACCACTGCCCCCCTACTCGCTGCGGCCGAGGGAGTTGGGATTGGGAGGCCTGGAGGATTTGTTTCAGGCTTACGGAATCAGGTACTACACCGCCGCTAAAATTGCGGAACTCGGATTCACCGTCAGCACCCTCGTGGACATGAAAGACGAAGAGTTGGAGGACATGATGAACAGCCTCTCTCACATTTTCCGCTGGGACCTTCTGGTGGGTGAAAGGTACGGAATTAAGGCTGCTGTAAGAGCCGAACGCAGACGTCTAGATGACGAGATCGAATCCTCCAGACGCCGTCACCTCTTGTCCAGCGACACCACTACTAACGTCGTTCTCGATGCCCTCTCTCAGGAAGGGCTATCGGAAGAGCCGGTGCAGCAGGAGAAAGAGGCGGTGGGGAGCGGAGGAGGAGGAGGAGCGTGGGAGGCAGTTGCAGCCGCTGAGATGAGGAAGAAGCAGCGGAGGAGAAATGGATCAAAAAAGAAGCAGGTGATGGCGATGGAGGAGGATAACGATGAAAACGAGGGAGCTGGGGACGAGGAGGAGAATATGGAAATCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGAGGAAAGAAAAACGGCCTCGACTATCTCTTTCACCTCTATGAACAGTGTCGTGAATTTTTGATCCAAGTCCAGAACATTGCCAAGGAAAGAGGAGAAAAATGCCCCACTAAGGTGACGAACCAGGTGTTTAGATATGCAAAGAAGGCGGGTGCAAGTTACATAAACAAGCCAAAAATGAGACACTACGTGCATTGCTATGCGCTGCATTGTCTGGACGAGGAGGCGTCGAACGCATTGAGGAGCGTTTTCAAAGAGAGGGGCGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTCTGGTGACCATAGCAGGTGCCCAAGGTTGGGACATCGATGCCATTTTTAATGCACATCCACGCCTCGCCATCTGGTATGTGCCTACCAAACTCCGCCAACTCTGCCACGCAGAGCGCAATGGTTCCACGGCCTCCACCTCCACTGCCTCCGCTCACTTGCCTTTTTAA 1161 54.18 MDPETLSATLFKWEPREMVGGGSGAPLPAPLPPYSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLVDMKDEELEDMMNSLSHIFRWDLLVGERYGIKAAVRAERRRLDDEIESSRRRHLLSSDTTTNVVLDALSQEGLSEEPVQQEKEAVGSGGGGGAWEAVAAAEMRKKQRRRNGSKKKQVMAMEEDNDENEGAGDEEENMEISERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRSVFKERGENVGAWRQACYKPLVTIAGAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNGSTASTSTASAHLPF 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25225632 25228194 - PI0019499.1 Cmetu02g0207 348219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0207 386 Coils Coil 105 125 - -
Cmetu02g0207 386 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Cmetu02g0207 386 Gene3D Protein LEAFY 212 380 IPR038276 -
Cmetu02g0207 386 MobiDBLite consensus disorder prediction 143 216 - -
Cmetu02g0207 386 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 211 374 IPR035209 GO:0003677
Cmetu02g0207 386 PANTHER PROTEIN LEAFY 1 383 IPR002910 GO:0003677|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0207 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g0207 . 1 376 Orphan Transcription Factor Family AT5G61850 69.6 2.4e-122 436.0
Cmetu11g0030 . 1 167 Orphan Transcription Factor Family AT1G06040 67.2 3.2e-60 228.4
Cmetu07g0164 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7390 PF17538 C_LFY_FLO 1.50E-106 CL0123 Cmetu TF