Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0248 ATGATCCAATGCTGCTTATTGAAACAATATGCTGAGATTTTTAATCCTCCAACAGGTTTACCACCCAAAAGGGATATAGACCATCAGATTTTGACTGCACCAGGGCAAAAACCCATTAATGTGAGACCATATAAGTACGAACATTTGCAAAAGGAAGAGATTGAGAAGTTGGTTGAAGAAATGCTTCAAGCTGGAATTATCCGCCCCAGCCACAACCCATACTCCAACCCAGTGCTCTTAGTAAGAAAAGAGATGGGGGGATGGCGCTTCTGTGTTGATTACCGAAAACTGAACCAAGTGACTAATTGTTGGGATGAACTTCACGAGGCTACTATCTTCTCGAAACTGGACCTACGATCGGGCTACCACCAGATAAGAATGAAAGAGGAAGATGTGGGGAAGGCAGCCTTTCGTACTCATGAAGGACACTATGAGTTCTTGGTGATGCCCTTTGGCCTGACAAACGCCCCTGCCACTTTCCAAGCACTGATGAACCAGTATCTTGGCCACTTGATATCAAACAGGGGAGTTGAGGCTGATGGAGAGAAAATCCAAGTAATGAAAGAGTGGCCCCAACCCAGAGATGTAACCAGTTTGAGGGGATTTTTGGGCCTCACGGGGTACTACAGAAGGTTTGTTAAAAATTATGGTGTGATTGCAGCTCCTTTGACTAAGTTGCTTCAGAAGAATGGATTCAAATGGGATGACCAAGCAACTGTAGCTTTTGAACAACTAAAGAAAGCCATGATATCAGTTCCTGTATTAGCTTTGCCAGACTGGTCATTGCCCTTTGTAGTAGAAACTGATGCTTCTGGAACAGGTTTAGGGGCTGTCCTATCCCAAAATGGCCATCCTATAGCTTTCTTCACCGTTCAGAGATGGAGACATTATGTTTTGGGACGTCGTTTCATAGTGATATCAGATCAGAAGGCATTAAAATTCTTGCTGGAACAGAGGGAAGTCCAACCTCAATTTCAGAAGTGGCTCACCAAACTTCTAGGCTACGATTTTGAAATCTTATACCAATCGGGCTTGCAGAATAAAGCAGCAGATGCCCTCTCAAGAGTGGAACCAAGGAAAGCTACTGAGGCTGAACTGTCTACCATGTCCACCTTGGGGTTACTAAGTACTGAAGCCATTCAGAAGGAAGTGAAAGAAGACCCTGATTTGCAGAAACTGATTGATAACCTGAAACTGAACCCAGAGGCTCATCCTAAGTACAAATGGGATAGGGAACGGTTGTGGTACAAAAATAGGTTGGTAATTCTCAAGCACTCACCTATAATACCAACTCTGTTGCACACTTTTCATGATTCCATCATGGGAGGCCATTCGGGGTTTCTAAGAACCTATAAAAGGTTGACAGGGGAACTGTACTGGGAGGGGATGAAATTGGATGTCAAGAAGTATGTTGAGCAGTGTGAGATATGTCAGCGTAATAAAACAGATTCCACATTTCCATCTGGCTTACTACAACCTATCCCTATTCCAGATTTAATCTTGGAAGAATGGTCAATGGATTTTGTGGAAGGACTACCTATGTCAGGGCACATGAATGTGATCATGGTTGTGGTGGATCGGCTGAGCAAATATGCCTACTTTATTACCCTCAAACATCCGTTCACAGCCAAACAGGTTGCAGCAGCTTTCGTTGAGAGAATAATAAGTAAGCACGGGATACCTAAATCTATCATTACAGACAGGGACAAAATATCCTCAGTAGTTTTTGGAAGGAGCTATTTTCTGTCATGGGGACCTCCTTAA 1764 43.42 MIQCCLLKQYAEIFNPPTGLPPKRDIDHQILTAPGQKPINVRPYKYEHLQKEEIEKLVEEMLQAGIIRPSHNPYSNPVLLVRKEMGGWRFCVDYRKLNQVTNCWDELHEATIFSKLDLRSGYHQIRMKEEDVGKAAFRTHEGHYEFLVMPFGLTNAPATFQALMNQYLGHLISNRGVEADGEKIQVMKEWPQPRDVTSLRGFLGLTGYYRRFVKNYGVIAAPLTKLLQKNGFKWDDQATVAFEQLKKAMISVPVLALPDWSLPFVVETDASGTGLGAVLSQNGHPIAFFTVQRWRHYVLGRRFIVISDQKALKFLLEQREVQPQFQKWLTKLLGYDFEILYQSGLQNKAADALSRVEPRKATEAELSTMSTLGLLSTEAIQKEVKEDPDLQKLIDNLKLNPEAHPKYKWDRERLWYKNRLVILKHSPIIPTLLHTFHDSIMGGHSGFLRTYKRLTGELYWEGMKLDVKKYVEQCEICQRNKTDSTFPSGLLQPIPIPDLILEEWSMDFVEGLPMSGHMNVIMVVVDRLSKYAYFITLKHPFTAKQVAAAFVERIISKHGIPKSIITDRDKISSVVFGRSYFLSWGPP 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19570929 19572968 + PI0020480.1 Cmetu02g0248 348260

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0248 587 SUPERFAMILY DNA/RNA polymerases 7 341 IPR043502 -
Cmetu02g0248 587 CDD RNase_HI_RT_Ty3 265 355 - -
Cmetu02g0248 587 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 20 166 - -
Cmetu02g0248 587 FunFam Transposon Tf2-6 polyprotein-like Protein 182 270 - -
Cmetu02g0248 587 FunFam Retrovirus-related Pol polyprotein from transposon 17.6-like Protein 123 155 - -
Cmetu02g0248 587 SUPERFAMILY Ribonuclease H-like 491 569 IPR012337 -
Cmetu02g0248 587 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 92 173 IPR000477 -
Cmetu02g0248 587 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 23 164 - -
Cmetu02g0248 587 CDD RT_LTR 65 179 - -
Cmetu02g0248 587 Gene3D - 491 578 IPR036397 GO:0003676
Cmetu02g0248 587 ProSiteProfiles Integrase catalytic domain profile. 491 587 IPR001584 GO:0015074
Cmetu02g0248 587 Gene3D - 393 481 - -
Cmetu02g0248 587 Gene3D - 181 269 IPR043128 -
Cmetu02g0248 587 Pfam Integrase zinc binding domain 429 482 IPR041588 -
Cmetu02g0248 587 Pfam RNase H-like domain found in reverse transcriptase 234 289 IPR041577 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0248 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g0667 Cmetu-Chr1:19082198 Cmetu02g0248 Cmetu-Chr2:19570929 2.40E-38 dispersed
Cmetu01g2687 Cmetu-Chr1:19082561 Cmetu02g0248 Cmetu-Chr2:19570929 1.80E-36 dispersed
Cmetu02g0248 Cmetu-Chr2:19570929 Cmetu10g0920 Cmetu-Chr10:236684 8.30E-142 dispersed
Cmetu10g1793 Cmetu-Chr10:5165235 Cmetu02g0248 Cmetu-Chr2:19570929 2.30E-33 wgd
Cmetu10g1364 Cmetu-Chr10:14039668 Cmetu02g0248 Cmetu-Chr2:19570929 1.10E-23 wgd
Cmetu10g0322 Cmetu-Chr10:6639558 Cmetu02g0248 Cmetu-Chr2:19570929 2.60E-12 wgd
Cmetu02g0248 Cmetu-Chr2:19570929 Cmetu03g0292 Cmetu-Chr3:23299980 3.30E-13 wgd
Cmetu02g0248 Cmetu-Chr2:19570929 Cmetu05g1017 Cmetu-Chr5:14858124 2.70E-23 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g75 . . . . . . . . Cmo19g00724 . . Cma20g00780 . . . . . Bhi05g01762 Tan02g0722 Cmetu01g0683 . . . . Cla02g00466 Cam02g0473 Cec02g0472 . Clacu02g0476 Cmu02g0471 Cre02g0803 . . . . Lsi10g00451 Csa07g00060 Chy11g00312 Cme01g01303 . . . Bda14g00596 . . . . Sed05g3572 . . . . . . . . Bhi10g01910 Tan05g1209 Cmetu02g0248 . . . . . . . . . . . Lsi11g01163 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000006 2 55 1 5 3 7 1 19 23 1 28 10 23 1 39 61 9 1 0 16 4 70 1 20 0 1 2 11 4 1 419