Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0262 ATGTTGTCTGACTCTGCACCCGATGTCGATTTTGGACTGAAATTGCTCGGTGCAGATGCAATGTCCATCCCAGAGCTGTATAGGTTTGTTCAGGAACCAATAAAAGATCAAGTTGCCAATATGTATCTATGGCCCAAGGCCCTACTTGAAGTACTGATAATGGACCCTACGAAGTATGTGAGATTCATCAATGCAAGCTATGAAAGTGTTGGAGGCCATTGTTGGAAGGAAGATGTGGATGTCGTGCTGAAGCAACAACTAATGGTTGCCAAGAGCCCCCTCCCCGAAAACTCATCTTCTTTGTCCTCCAGCCCTAGCGCTGCCCAGCCCCGTGCCGCCCGGAGTTCGTTCTACCTACTCGTGCCGTCAGAGCTCGTCTCGCCTACCTGTGCCGCCTGGACTTCGTTCGTGTAG 414 50.72 MLSDSAPDVDFGLKLLGADAMSIPELYRFVQEPIKDQVANMYLWPKALLEVLIMDPTKYVRFINASYESVGGHCWKEDVDVVLKQQLMVAKSPLPENSSSLSSSPSAAQPRAARSSFYLLVPSELVSPTCAAWTSFV 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5932706 5936405 + PI0011073.1 Cmetu02g0262 348274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0262 137 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 5 57 IPR045050 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0262 K28063 - - gmx:100820475 88.9669
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0262 Cmetu-Chr2:5932706 Cmetu06g0797 Cmetu-Chr6:12796351 1.80E-18 dispersed
Cmetu02g0262 Cmetu-Chr2:5932706 Cmetu05g1417 Cmetu-Chr5:14500676 7.40E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1144 . . . . . . . . . Cmo12g00352 . . . Car12g00378 Sed11g1098 . Cpe07g00356 Bhi04g00131 Tan02g2840 Cmetu02g0262 . Hepe10g0165 . Lcy13g1902 Cla08g01413 Cam08g1892 Cec08g1469 Cco08g1602 Clacu08g1584 . Cre08g1367 Cone4ag1543 . Cone17ag1416 . . . . Cme03g01869 Blo17g00739 . Bda08g01211 Bda01g01538 Bpe02g01735 . . . . . . Cma12g00400 . . . . . . . . . . . . . . . . . . . Lsi08g01308 . Chy03g01373 .