Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu02g0293 ATGGAAGAGAAAATGGAAAAGAATTATAATGTAGGATTTTGTTGTTCATCAGTTGAGTCTCAGAAGGCAAATAATCCGGCGCCGTTTTTAAGCAAAACTTATGATTTGGTGGAGGATCCTACCACTGATCACATCGTTTCTTGGGGCCAATCTCTTACAACTTTTATTGTTTGGAGACCCTCTGAATTTGCTACTCATATTCTTCCCAACTACTTCAAACACAACAATTTCTCAAGCTTTGTTAGACAACTCAACACTTATAGATGGGAATTTGGGAATGAGAACTTCAAGAAAGGAGAGAAGCAATTATTATTAGAGATTCAAAGAAGAAAATCCCATAATCACAACAACAATAATCAACAAATTCCATTCCAATTCTTCCATCTACATCAACAACAACAACTAAGCCTTTGTTACACCACCACTTCCTCCTCCGATCCCGACATCCTGGCGGCGCTAACACAAGACAACCGCCGTTTGCGGCGGAGAAACTTCATGCTATTGTCAGAGCTGGCTCAGATGAAGAATCTCTACTCTGACATCATCTACTTCATCCAAAACAACGTCAAACCACTCGATAACAAATATTGCAACAAATCAGTTCCCAAATTGGTCGAGTTGGACCCTCCATCATCACCGACGCCAATGTCACCCGAGATCCGATTAGAAGAGGGAAATGGGATGGTGAAGCTTTTTGGGGTTCCTATTAGAGGGAAGAAGAGAGTACTTCCTGAAGAGAGTGAGGTTTAG 750 41.07 MEEKMEKNYNVGFCCSSVESQKANNPAPFLSKTYDLVEDPTTDHIVSWGQSLTTFIVWRPSEFATHILPNYFKHNNFSSFVRQLNTYRWEFGNENFKKGEKQLLLEIQRRKSHNHNNNNQQIPFQFFHLHQQQQLSLCYTTTSSSDPDILAALTQDNRRLRRRNFMLLSELAQMKNLYSDIIYFIQNNVKPLDNKYCNKSVPKLVELDPPSSPTPMSPEIRLEEGNGMVKLFGVPIRGKKRVLPEESEV 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6461000 6462573 - PI0006449.1 Cmetu02g0293 348305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu02g0293 249 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu02g0293 249 PRINTS Heat shock factor (HSF) domain signature 29 52 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu02g0293 249 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu02g0293 249 SUPERFAMILY Winged helix DNA-binding domain 24 110 IPR036390 -
Cmetu02g0293 249 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 204 IPR027725 -
Cmetu02g0293 249 FunFam Heat stress transcription factor B-4 21 111 - -
Cmetu02g0293 249 SMART hsfneu3 25 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu02g0293 249 Pfam HSF-type DNA-binding 29 110 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cmetu02g0293 249 Gene3D - 20 111 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu02g0293 K09419 - - csv:101221373 444.506
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0293 Cmetu-Chr2:6461000 Cmetu03g2201 Cmetu-Chr3:1274266 1.20E-44 dispersed
Cmetu02g0293 Cmetu-Chr2:6461000 Cmetu07g0842 Cmetu-Chr7:22554070 2.80E-46 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0897 . 34 234 HSF AT4G17750 60.1 2.7e-61 233.4
Cmetu03g1160 . 40 240 HSF AT4G17750 52.7 4.8e-58 222.6
Cmetu01g0604 . 121 327 HSF AT4G17750 55.3 5.3e-57 219.2
Cmetu04g1703 . 46 267 HSF AT4G17750 50.2 1.9e-54 210.7
Cmetu05g1296 . 60 252 HSF AT4G17750 50.2 9.4e-46 181.8
Cmetu11g1527 . 12 114 HSF AT4G17750 69.9 5.9e-40 162.5
Cmetu03g2201 . 20 118 HSF AT4G17750 71.7 6.6e-39 159.1
Cmetu07g0842 . 20 118 HSF AT4G17750 69.7 2.5e-38 157.1
Cmetu09g1249 . 20 115 HSF AT4G17750 69.8 1.8e-36 151.0
Cmetu06g0897 . 7 239 HSF AT5G16820 55.0 1.1e-59 228.0
Cmetu05g1161 . 41 246 HSF AT5G16820 55.1 1.5e-59 227.6
Cmetu01g0604 . 122 331 HSF AT5G16820 55.6 1.2e-56 218.0
Cmetu03g1160 . 41 240 HSF AT5G16820 52.6 2.2e-55 213.8
Cmetu11g1527 . 13 115 HSF AT5G16820 72.8 2.9e-39 160.2
Cmetu06g1701 . 13 514 HSF AT1G32330 53.8 3.5e-122 435.6
Cmetu06g0897 . 23 224 HSF AT1G32330 53.5 2.5e-59 226.9
Cmetu01g0604 . 110 327 HSF AT1G32330 51.8 8.0e-58 221.9
Cmetu05g1161 . 27 226 HSF AT1G32330 53.1 1.8e-57 220.7
Cmetu03g1160 . 29 221 HSF AT1G32330 53.7 4.9e-55 212.6
Cmetu12g1147 . 13 191 HSF AT1G32330 50.5 4.3e-43 172.9
Cmetu11g1527 . 11 118 HSF AT1G32330 67.9 4.4e-40 162.9
Cmetu03g2201 . 20 117 HSF AT1G32330 71.4 4.1e-38 156.4
Cmetu05g1161 . 41 245 HSF AT3G02990 55.0 5.8e-61 232.3
Cmetu06g0897 . 35 238 HSF AT3G02990 56.2 1.4e-59 227.6
Cmetu01g0604 . 122 339 HSF AT3G02990 53.6 5.4e-59 225.7
Cmetu03g1160 . 41 240 HSF AT3G02990 51.7 2.1e-55 213.8
Cmetu11g1527 . 13 106 HSF AT3G02990 74.5 3.6e-39 159.8
Cmetu06g0897 . 11 234 HSF AT2G26150 59.0 2.9e-70 262.7
Cmetu01g0604 . 110 326 HSF AT2G26150 55.0 1.1e-64 244.2
Cmetu06g1701 . 8 243 HSF AT2G26150 55.7 5.6e-61 231.9
Cmetu12g1147 . 5 155 HSF AT2G26150 53.3 3.7e-41 166.0
Cmetu11g1527 . 5 118 HSF AT2G26150 62.3 1.5e-37 154.1
Cmetu04g1703 . 30 272 HSF AT5G03720 57.1 1.1e-71 267.7
Cmetu11g1527 . 13 137 HSF AT4G18880 64.0 4.2e-44 176.0
Cmetu06g1519 . 3 460 HSF AT4G13980 51.6 1.2e-111 400.6
Cmetu11g1527 . 1 137 HSF AT4G13980 59.1 3.6e-39 159.8
Cmetu06g0897 . 23 215 HSF AT5G43840 54.4 1.1e-54 210.7
Cmetu06g0897 . 19 313 HSF AT3G22830 54.5 3.7e-88 322.4
Cmetu05g1161 . 29 345 HSF AT3G22830 51.4 3.1e-87 319.3
Cmetu03g1160 . 29 251 HSF AT3G22830 53.2 4.8e-64 242.3
Cmetu06g1701 . 29 242 HSF AT3G22830 58.9 9.1e-63 238.0
Cmetu05g1296 . 50 259 HSF AT3G22830 51.9 1.2e-51 201.1
Cmetu05g1161 . 26 320 HSF AT3G51910 54.2 9.4e-72 267.3
Cmetu03g1160 . 29 221 HSF AT3G51910 57.0 2.1e-55 213.0
Cmetu05g1161 . 27 334 HSF AT3G63350 50.2 5.9e-69 258.1
Cmetu06g0897 . 13 224 HSF AT3G63350 52.1 2.4e-54 209.5
Cmetu03g1160 . 29 228 HSF AT3G63350 53.2 8.6e-52 201.1
Cmetu11g1527 . 5 139 HSF AT3G63350 56.9 2.1e-37 153.3
Cmetu09g1249 . 16 336 HSF AT4G11660 54.1 2.0e-80 296.6
Cmetu07g0842 . 16 119 HSF AT4G11660 74.0 1.4e-44 177.6
Cmetu03g2201 . 16 121 HSF AT4G11660 71.7 1.8e-44 177.2
Cmetu04g0111 . 21 117 HSF AT4G11660 72.2 2.1e-37 153.7
Cmetu06g1701 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cmetu08g1024 . 37 215 HSF AT2G41690 57.0 3.6e-46 182.2
Cmetu03g2201 . 19 374 HSF AT1G46264 52.0 4.1e-88 322.0
Cmetu07g0842 . 19 326 HSF AT1G46264 55.2 6.8e-83 304.7
Cmetu02g0293 . 18 192 HSF AT1G46264 51.4 2.1e-44 176.8
Cmetu06g1701 . 33 138 HSF AT1G46264 73.6 3.8e-41 166.0
Cmetu11g1527 . 5 105 HSF AT1G46264 68.3 9.6e-37 151.4
Cmetu06g0897 . 34 234 HSF AT4G17750 60.1 2.7e-61 233.4
Cmetu03g1160 . 40 240 HSF AT4G17750 52.7 4.8e-58 222.6
Cmetu01g0604 . 121 327 HSF AT4G17750 55.3 5.3e-57 219.2
Cmetu04g1703 . 46 267 HSF AT4G17750 50.2 1.9e-54 210.7
Cmetu05g1296 . 60 252 HSF AT4G17750 50.2 9.4e-46 181.8
Cmetu11g1527 . 12 114 HSF AT4G17750 69.9 5.9e-40 162.5
Cmetu03g2201 . 20 118 HSF AT4G17750 71.7 6.6e-39 159.1
Cmetu07g0842 . 20 118 HSF AT4G17750 69.7 2.5e-38 157.1
Cmetu09g1249 . 20 115 HSF AT4G17750 69.8 1.8e-36 151.0
Cmetu06g0897 . 7 239 HSF AT5G16820 55.0 1.1e-59 228.0
Cmetu05g1161 . 41 246 HSF AT5G16820 55.1 1.5e-59 227.6
Cmetu01g0604 . 122 331 HSF AT5G16820 55.6 1.2e-56 218.0
Cmetu03g1160 . 41 240 HSF AT5G16820 52.6 2.2e-55 213.8
Cmetu11g1527 . 13 115 HSF AT5G16820 72.8 2.9e-39 160.2
Cmetu06g1701 . 13 514 HSF AT1G32330 53.8 3.5e-122 435.6
Cmetu06g0897 . 23 224 HSF AT1G32330 53.5 2.5e-59 226.9
Cmetu01g0604 . 110 327 HSF AT1G32330 51.8 8.0e-58 221.9
Cmetu05g1161 . 27 226 HSF AT1G32330 53.1 1.8e-57 220.7
Cmetu03g1160 . 29 221 HSF AT1G32330 53.7 4.9e-55 212.6
Cmetu12g1147 . 13 191 HSF AT1G32330 50.5 4.3e-43 172.9
Cmetu11g1527 . 11 118 HSF AT1G32330 67.9 4.4e-40 162.9
Cmetu03g2201 . 20 117 HSF AT1G32330 71.4 4.1e-38 156.4
Cmetu05g1161 . 41 245 HSF AT3G02990 55.0 5.8e-61 232.3
Cmetu06g0897 . 35 238 HSF AT3G02990 56.2 1.4e-59 227.6
Cmetu01g0604 . 122 339 HSF AT3G02990 53.6 5.4e-59 225.7
Cmetu03g1160 . 41 240 HSF AT3G02990 51.7 2.1e-55 213.8
Cmetu11g1527 . 13 106 HSF AT3G02990 74.5 3.6e-39 159.8
Cmetu06g0897 . 11 234 HSF AT2G26150 59.0 2.9e-70 262.7
Cmetu01g0604 . 110 326 HSF AT2G26150 55.0 1.1e-64 244.2
Cmetu06g1701 . 8 243 HSF AT2G26150 55.7 5.6e-61 231.9
Cmetu12g1147 . 5 155 HSF AT2G26150 53.3 3.7e-41 166.0
Cmetu11g1527 . 5 118 HSF AT2G26150 62.3 1.5e-37 154.1
Cmetu04g1703 . 30 272 HSF AT5G03720 57.1 1.1e-71 267.7
Cmetu11g1527 . 13 137 HSF AT4G18880 64.0 4.2e-44 176.0
Cmetu06g1519 . 3 460 HSF AT4G13980 51.6 1.2e-111 400.6
Cmetu11g1527 . 1 137 HSF AT4G13980 59.1 3.6e-39 159.8
Cmetu06g0897 . 23 215 HSF AT5G43840 54.4 1.1e-54 210.7
Cmetu06g0897 . 19 313 HSF AT3G22830 54.5 3.7e-88 322.4
Cmetu05g1161 . 29 345 HSF AT3G22830 51.4 3.1e-87 319.3
Cmetu03g1160 . 29 251 HSF AT3G22830 53.2 4.8e-64 242.3
Cmetu06g1701 . 29 242 HSF AT3G22830 58.9 9.1e-63 238.0
Cmetu05g1296 . 50 259 HSF AT3G22830 51.9 1.2e-51 201.1
Cmetu05g1161 . 26 320 HSF AT3G51910 54.2 9.4e-72 267.3
Cmetu03g1160 . 29 221 HSF AT3G51910 57.0 2.1e-55 213.0
Cmetu05g1161 . 27 334 HSF AT3G63350 50.2 5.9e-69 258.1
Cmetu06g0897 . 13 224 HSF AT3G63350 52.1 2.4e-54 209.5
Cmetu03g1160 . 29 228 HSF AT3G63350 53.2 8.6e-52 201.1
Cmetu11g1527 . 5 139 HSF AT3G63350 56.9 2.1e-37 153.3
Cmetu09g1249 . 16 336 HSF AT4G11660 54.1 2.0e-80 296.6
Cmetu07g0842 . 16 119 HSF AT4G11660 74.0 1.4e-44 177.6
Cmetu03g2201 . 16 121 HSF AT4G11660 71.7 1.8e-44 177.2
Cmetu04g0111 . 21 117 HSF AT4G11660 72.2 2.1e-37 153.7
Cmetu06g1701 . 33 126 HSF AT4G11660 69.1 1.8e-36 150.6
Cmetu08g1024 . 37 215 HSF AT2G41690 57.0 3.6e-46 182.2
Cmetu03g2201 . 19 374 HSF AT1G46264 52.0 4.1e-88 322.0
Cmetu07g0842 . 19 326 HSF AT1G46264 55.2 6.8e-83 304.7
Cmetu02g0293 . 18 192 HSF AT1G46264 51.4 2.1e-44 176.8
Cmetu06g1701 . 33 138 HSF AT1G46264 73.6 3.8e-41 166.0
Cmetu11g1527 . 5 105 HSF AT1G46264 68.3 9.6e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012657 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 1 1 1 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7393 PF00447 HSF_DNA-bind 8.20E-24 CL0123 Cmetu TF